Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00346 ATGGGTGCTCCTAAGCAGAAATGGACTGCAGAAGAAGAAGCTGCGTTGAAAGCTGGAGTAGTCAAACATGGAGCAGGAAAATGGCGCACCATACTTACAGATCCTGAATTTAGTGCTATTTTGCGCATGCGTTCAAATGTAGATCTTAAGGATAAATGGAGGAATATAAATGTCACAGCAATATGGGGATCCCGGCAGAAGGCAAAACTTGCTCTTAAGAGGAGCCTACCTGCCCCCAAAATTGACAATAACCATATGGCTTTAAGTACTGTAGTTCAACATGATGAAGTTCTTGATACTAAGCCTTTAGCAGTTTCTGGTGGACCATTGCAATCTCCTAATTTTAAAGAACAAATATCAAGGTTGGTGGATAATCATATATTGGAGGCCATTGTCAACATGAAGGAGCAAAAGGGTTCTGACAAAGGTGCCATTATTTCTTACATGGAGGAAAAGTATCGGTGTCCACCAAATATCAGTAAATTACTGTCAACCAAACTGAAGCATATGGTAGCAAGTGGCAAAATAATCAAGGAGAAGCATAGATACAGGATAGCATCAAGTTCAGCTGTCTCTGAGAAAAGAAGGTCCTCGTCATTGGAAGGAAGGTCCAAAGATCCTTCAGAAGCAAATAAGAATGATGATGTCAACATCCTTTCAAAATCCCAAATTGATAAAGAGATATCAAAAGTGAAGGGCTTGACAGCTCAAGAGGCAGCAGCTGCAGCTGCAAAAGCTGTGGCAGAGGCAGAGGCTGCAATTGCACAGGCTGAGGCAGCAGCTAGGGAGGCAGAGGCTGCAGAAGCTGAAGCTGAGGCTGCCCAAGTGTTTGCAAAAGCAGCAATGAAGGCGCTAAAATGCAAAATGCTTCATATTTGGTAG 882 0.4286 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILTDPEFSAILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKRSLPAPKIDNNHMALSTVVQHDEVLDTKPLAVSGGPLQSPNFKEQISRLVDNHILEAIVNMKEQKGSDKGAIISYMEEKYRCPPNISKLLSTKLKHMVASGKIIKEKHRYRIASSSAVSEKRRSSSLEGRSKDPSEANKNDDVNILSKSQIDKEISKVKGLTAQEAAAAAAKAVAEAEAAIAQAEAAAREAEAAEAEAEAAQVFAKAAMKALKCKMLHIW 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00346 293 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 118 187 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vimu11g00346 293 SUPERFAMILY "Winged helix" DNA-binding domain 124 196 IPR036390 -
Vimu11g00346 293 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Vimu11g00346 293 PANTHER SINGLE MYB HISTONE 4 1 288 IPR044597 GO:0003691
Vimu11g00346 293 SMART h15plus2 104 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vimu11g00346 293 SUPERFAMILY Homeodomain-like 2 66 IPR009057 -
Vimu11g00346 293 MobiDBLite consensus disorder prediction 187 217 - -
Vimu11g00346 293 CDD SANT_TRF 6 57 - -
Vimu11g00346 293 Gene3D - 2 59 - -
Vimu11g00346 293 Coils Coil 240 277 - -
Vimu11g00346 293 MobiDBLite consensus disorder prediction 196 212 - -
Vimu11g00346 293 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Vimu11g00346 293 SMART sant 4 59 IPR001005 -
Vimu11g00346 293 Pfam linker histone H1 and H5 family 127 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vimu11g00346 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Vimu11g00346 293 FunFam Telomere repeat-binding factor 1 2 58 - -
Vimu11g00346 293 Gene3D - 115 198 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00346 Vimu-Chr11 3675567 3679823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00346 1 293 Single Myb Histone (SMH) Gene Family AT5G67580 54.485 2.25e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu11g00346 Linker_histone 4.1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00346 K09422 - gmx:100779583 436.032