Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00343 ATGATCTTGCAGTTAGTAGCTGATGAGACAGAGCCTTCGGACTTCTCTTCAGTTGTGTCGCGATTCAAGAGTCCCATGGCGGCTTTGTCTTCCACCTATCCTACATCCCTTCCAAACCCTCCCAAATTTTCATCCCACAAATTCAATTTCCACCCACAACAGCTACTCAAATTACGCCCTCGCTCCCCAAAATCGAAGCCAAACAAGCCCTTATTTTTTACTAGAGTCCCCACCTCAACATGCGAGCGCTGCAATGTGTTCAGCGAGGAACTGATCGGAAGCGTAGCGGAGGAGGAGGGTTACAGCAGCTCCATGGACGATAAGCAATTCGTGCGTTGGTTTCGTGAGACGTGGCCGTACTTGAGGGTCCACCGTGGTGCGACCTTCGTTGTCATCGTTTCCGGTGAAATTGTATTATATGAGAGAGAAATATTGCATAGTCTGGGATCAAAATGTGCTTATGATCTTAACCAGTTTGATATAGCCTTTCTTCATCACCTGGGAATCCGGTTTGTTCTTGTTCCGGGGACCCATATGCAAATTGACAATCTTTTGCGTGAGAGAGGGAGAGAACCTAAGTATGTTGGTCCATATAGGGTAACTGATGATGAGTCTCTAGCAGCTGCAATGGAAGCAGCTGGGAGAATAAGATTGATGATTGAAGCGAAGCTTTCTCCTGGACCCTCCATTTGCAATATTCGTCGACATGGTGACAATAGCCGTTTGCATGAAGTTGGTGTCAGTGTTGCAAGTGGAAACTTTCTTGCAGCCAAGCTTGGCGGTTTCCTGCTTGACCATGAATGGTGGTCTAAGAAGAATAAACCTAAGATCTTGAGAAGAGGGGTTGTCAAAGGAGTTGATTTTGGGTCAACTGGGGAGGTTAAAAAAGTAGACGTTTCTCGCATGCGTGAGAGGCTTGATGGCAACTGCATTGTTATTTTAAGCAACTTGGGTTACTCCAGCTCTGGAGAAGTATTAGATTGCAAGTATGCTTTAGAAACTCTGATAATTCCTTATTACAACCTGGTCAAAGGTTCTAGTTATTGTTCAGCCTCTGCTCTCAATACCTATGAAGTTGCAACAGCTTGTGCGTTGGCAATAGGAGCAGACAAGCTTATATGCATTATGGATGGTCCGATCCTGGATGAAAGTGGACACCTTATTCGCTTCTTGACTCTTCAAGAGGCAGACATGCTAATCCGTAAACGGGTTGAACAAAGTGAAACAGCTGCGAACTATGTCAAAGCTGTTGCGGAAGAAAGTTTCAACACACTTAATAAATTTAATGGGGATCCGCGGAATGGAAATCCATTTTCAGGATGTCATATTGCAACCTTCCATAATGGTGTTGGTTTTGACAACGGGAATGGCCTTTGGTCTGGGGAGCAGGGTTTTGCTATAGGAGGTCAGGAGTCCCTAAGTCGGACGAATGGTTACCTGTCAGAGCTAGCTGCAGCAGCTTTCGTTTGCAGAGGCGGTGTTCAAAGAGTTCATTTGTTGGATGGCACTATTAGTGGAGTTCTATTGTTGGAATTGTTCAAGAGAGATGGGATGGGGACAATGGTGGCTAGTGACCTTTATGAAGGCACCCGGATGGCTCAAGTAACAGATATTTCTGGAATTAAACAACTTATACAGCCTTTACAGGAGTCTGGCATATTAGTTATGCGGACTGATGAAGAGCTGCTTCAATCGTTAGGGTCCTTCATTGTTGTGGAAAGAGAAGGCCAAATAATTGCTTGCGCTGCACTTTTTCCTTTCTTTGAAGAGAAGTGTGGAGAGGTTGCTGCAATTGCAGTATCCCCTGATTGTAGAGGCCAAGGACAGGGAGACAAATTACTCGGTATGATATGCTATTATTGCCTCTGTGGATTGACATTATTGTTCTTAATTGATAGAGAACCAGTCAAGTGA 1914 0.4478 MILQLVADETEPSDFSSVVSRFKSPMAALSSTYPTSLPNPPKFSSHKFNFHPQQLLKLRPRSPKSKPNKPLFFTRVPTSTCERCNVFSEELIGSVAEEEGYSSSMDDKQFVRWFRETWPYLRVHRGATFVVIVSGEIVLYEREILHSLGSKCAYDLNQFDIAFLHHLGIRFVLVPGTHMQIDNLLRERGREPKYVGPYRVTDDESLAAAMEAAGRIRLMIEAKLSPGPSICNIRRHGDNSRLHEVGVSVASGNFLAAKLGGFLLDHEWWSKKNKPKILRRGVVKGVDFGSTGEVKKVDVSRMRERLDGNCIVILSNLGYSSSGEVLDCKYALETLIIPYYNLVKGSSYCSASALNTYEVATACALAIGADKLICIMDGPILDESGHLIRFLTLQEADMLIRKRVEQSETAANYVKAVAEESFNTLNKFNGDPRNGNPFSGCHIATFHNGVGFDNGNGLWSGEQGFAIGGQESLSRTNGYLSELAAAAFVCRGGVQRVHLLDGTISGVLLLELFKRDGMGTMVASDLYEGTRMAQVTDISGIKQLIQPLQESGILVMRTDEELLQSLGSFIVVEREGQIIACAALFPFFEEKCGEVAAIAVSPDCRGQGQGDKLLGMICYYCLCGLTLLFLIDREPVK 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00343 637 SUPERFAMILY Carbamate kinase-like 105 524 IPR036393 -
Vimu11g00343 637 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 528 637 IPR000182 GO:0016747
Vimu11g00343 637 Gene3D - 108 527 IPR036393 -
Vimu11g00343 637 CDD NAT_SF 569 614 - -
Vimu11g00343 637 Gene3D - 528 630 - -
Vimu11g00343 637 CDD AAK_NAGS-ABP 109 522 IPR033719 -
Vimu11g00343 637 PANTHER AMINO-ACID ACETYLTRANSFERASE 346 631 IPR010167 GO:0004042|GO:0005737|GO:0006526
Vimu11g00343 637 Pfam Acetyltransferase (GNAT) family 567 619 IPR000182 GO:0016747
Vimu11g00343 637 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 531 626 IPR016181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00343 Vimu-Chr11 3651598 3656937 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Vimu11g00343 Acetyltransf_1 8.2e-07 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00343 K14682 - gmx:100800925 832.017