Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00339 ATGTCGCTCGAGTCCACAAGCCACCAAACTCCTGACTTGTATTGCAGTGAAGTAACTAGCGAAGTGATTCACTTGGAGGATTCTGATGAGGATTTGAAGTTGAATTATGTTCTGTGGGGAGACTCCAACAGTGATGAAAGTTGTCTACTGAGCTTATTAGAATCTGAAAATGACCAAGTACAGGAACAAACAAAGTCCCCAGGACAGCTTCCCAAAACATGCCTGGTTAATGCTCGAGAAGAGGCCATAAATTGGATCCTAAAGGTGCATGCTTACTACAGTTTTAGACCTGAGACAGCTTATCTTTCTGTAAATTATCTCGATCGTTTCCTCTTGTCACGCACCTTAACGCATGATAAAGCATGGCCTCTGCAGCTGTTATCAGTTGCTTGTCTTTCACTAGCAGCTAAAATGGAAGAAACCAAAGTGCCACTTCTTTTGGACCTACAAGTGATCGAGTCTAGGTTCCTCTTTAAGCCCAAAACAGTTCAAAGGATGGAACTTTTGGTTATGGCCAGTCTCAAGTGGCGATTGCGCCCTATAACCCCTTTTGATTTTGTCCATCTTTTCATTGCCAAGCTTTCATGGTCTGCTTCCACATGGGGTGATTTAAGTTTCACTGTTTCTCGTGTCTCAGATGTTATTATCAGAACATGTCTAGTCATGGATTTCTTGGTGTTTTCACCATCCACAATAGCAGCAGCTGCCCTTTTATGGGCAAACAATCAATGTGTAGAAGACACGAAATCAGATTGTTTCCACAAGAATATAAACTTTGAGATGGTGCAGAAATGTTACAAACTAATGAAGCAGAAACAGATAATTCTCCGATCAGAATTTTATTGGCCAAGGAGTCTGCAATTATTGCCCCGAAGTCCCACCTGTGTGCTTGATGGTGCAGCTATGCAAGAAAGCTGCGATGCTTACAAGCCCTGA 936 0.4241 MSLESTSHQTPDLYCSEVTSEVIHLEDSDEDLKLNYVLWGDSNSDESCLLSLLESENDQVQEQTKSPGQLPKTCLVNAREEAINWILKVHAYYSFRPETAYLSVNYLDRFLLSRTLTHDKAWPLQLLSVACLSLAAKMEETKVPLLLDLQVIESRFLFKPKTVQRMELLVMASLKWRLRPITPFDFVHLFIAKLSWSASTWGDLSFTVSRVSDVIIRTCLVMDFLVFSPSTIAAAALLWANNQCVEDTKSDCFHKNINFEMVQKCYKLMKQKQIILRSEFYWPRSLQLLPRSPTCVLDGAAMQESCDAYKP 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00339 311 SMART cyclin_7 84 172 IPR013763 -
Vimu11g00339 311 SMART cyclin_7 185 271 IPR013763 -
Vimu11g00339 311 Pfam Cyclin, C-terminal domain 181 271 IPR004367 -
Vimu11g00339 311 CDD CYCLIN_AtCycD-like_rpt2 181 269 - -
Vimu11g00339 311 Pfam Cyclin, N-terminal domain 53 178 IPR006671 -
Vimu11g00339 311 CDD CYCLIN_AtCycD-like_rpt1 78 176 - -
Vimu11g00339 311 FunFam D6-type cyclin 68 175 - -
Vimu11g00339 311 PANTHER CYCLINS 51 271 IPR039361 -
Vimu11g00339 311 Gene3D - 52 266 - -
Vimu11g00339 311 Gene3D - 62 179 - -
Vimu11g00339 311 FunFam D6-type cyclin 176 267 - -
Vimu11g00339 311 SUPERFAMILY Cyclin-like 163 278 IPR036915 -
Vimu11g00339 311 ProSitePatterns Cyclins signature. 79 110 IPR006671 -
Vimu11g00339 311 SMART Cyclin_C_2 181 306 IPR004367 -
Vimu11g00339 311 SUPERFAMILY Cyclin-like 50 178 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00339 Vimu-Chr11 3590931 3592784 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00339 76 274 Core Cell Cycle Gene Families AT1G70210 46.602 4.76e-56 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00339 K18810 - gmx:100799323 473.011