Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00336 ATGGCAATGTTTCAGCCTACTTGTAAGAGGGATGGGATCGAGGGCCAGATTCTAGATCTGGACACGGCGGTGAAAGATGGGGTTTTGGGCGGGGTGGATTCTGGGGTTGTGGGGACTGGGGTTGGTGAAAAACTGGATCTTGGGAGAATGATTGAAGAGTTAGACTTGTGTGAAGTTCCCTCTGTGTTCATTTGCCCAATTTCCCTTGAGCCAATGCAGGACCCTGTGACTCTTTGCACGGGTCAGACCTACGAGAGGTCCAACATTCTCAAATGGTTCAGTCTGGGACACTTCACTTGCCCCACAACAATGCAAGAGCTCTGGGACGATTCCATCACACCAAACACCACTCTCTACCGTTTGATATCCACCTGGTTTTCTCAGAAGTACCTAGTGATGAAGAAGAGATCAGAAGACGTCCATGGGAGGGTGTCGGAGCTTGTTGAGACTCTCAAGAAGGTGAAGGGGCAAGCTCGTGTTCTTGCCCTTAAGGAACTCCATCAAGTGGTGGCTGTTCATGCCACTGCCCGCAAGGCATTGGTCGATGGCGATGGAGTGTCCGTGGTGTCGGCGTTGCTCGGTCCTTTTACTTCCCATGCGGTTGGCTCCGAGGTCATTGGTGTTCTCGTGAGTTTGAACCTTGATTGTGAGTCCAAGAGGAATCTACTGCAGCCTGCAAGGGTTTCCCTGATGGTGGACATTTTGAATGAGGGTTCAATTGAGACGAAGATCAATTGCACGCGGCTGATTGAGACATTGATTGAAGGGAAGGATTTCAAGTTGGAGATTTTCAGGAGCCATAGTCTTTTGGTTGGATTGATGAGGCTCGTGAAAGACAAAAGGCATTCAAATGGAATTTGCCCTGGATTGAGGCTCCTCAGAACAGTGTGCTTGCATTCAGAAGTTAAGAGTTTGCTGGTAAGCATTGGGGCTGTTTCTCAATTGGTTGAGTTGTTGTCTGGTTTGGAGCCCGAATGTTTGGAATTGGCTCTTTCTATCTTGGATGCACTGGCTTCTGTTCCAGAAGGAAGATTAGCTTTGAAGAATTGTTCTAATACGATACACGTTATGGTGAAACTGTTGATGCGGGTCTCAGAAAACTGTACTCAATATGCGTTATCAATACTGTGGTCTGTGTGCAAGCTGGCACCTGAGGAGTGCTCTTTGATCGCTGTGGAAGCAGGACTTGCTGCAAAACTTCTCCTTGTGATCCAAAGCGGTTGCAATCCTATATTGAAACAACAGTCGGCTGAGCTTTTGAAATACAATCTTCATTTCCAAGTGCAAACTTACGAGAACCATTCAATGACCATGAGTATTAACCTGGTTGTATCAACAGTTTGTAAATTTGTAGGGCAAGAGAAGCAGAGACCAGCTACTTCACAGACTACAGAACTAAAGAACCCCAGAAGTTGGCATGGGGATAGTGGGATGAAAGAAATCATGCTGTTGTTGGATAAAGATTCTATTAGGAGAGGGATCACATTCACAGCTGATGTGGGGCTTATGGAGAGCCCCTTAGGCTTTCAATTTTCATTTAATCTGTACAATGGAAATAACCATTCTTATTATGCACTGCACCTGCAATTTGTTGAAGCAAGTTATATTGATATTATTAATTCTTTTATGACAATTATTGTGTGTCCTTTCCAAGTGAAGAAACTACATCAGCATCGTTGTTCAGGCAGCGAAATGACAGGAGAGGTGAAAAGAAACAGTGAAAGGCGTGGACAGCAGAGAGATAGCAGCTGTTTGGCCTTAGGAATACCTCCAAATCGGATAACATCCCACTCTGTTCCAACACTCATGCTGGCGCGTGTATGTAATCATAGATCCATGGTGGAAGGACAAGCTAGAGCTAGTACTCGTGCACATTGTGAAGTTGGGTTCGTGTGTGGTGTTGGAGTTGTCGTGGTGGTTCATGATAGCGCTGCTTCATTTGTATTGCTTTTGATTATTATTGTGTCTGGAGGTGGTGAATATTGTGTGTGGAGGTGTTGGATCTTGGTGCAAGAGTGGTGGTATATATGTGCATTAATGATGATTGATGTGTGTTAG 2058 0.4538 MAMFQPTCKRDGIEGQILDLDTAVKDGVLGGVDSGVVGTGVGEKLDLGRMIEELDLCEVPSVFICPISLEPMQDPVTLCTGQTYERSNILKWFSLGHFTCPTTMQELWDDSITPNTTLYRLISTWFSQKYLVMKKRSEDVHGRVSELVETLKKVKGQARVLALKELHQVVAVHATARKALVDGDGVSVVSALLGPFTSHAVGSEVIGVLVSLNLDCESKRNLLQPARVSLMVDILNEGSIETKINCTRLIETLIEGKDFKLEIFRSHSLLVGLMRLVKDKRHSNGICPGLRLLRTVCLHSEVKSLLVSIGAVSQLVELLSGLEPECLELALSILDALASVPEGRLALKNCSNTIHVMVKLLMRVSENCTQYALSILWSVCKLAPEECSLIAVEAGLAAKLLLVIQSGCNPILKQQSAELLKYNLHFQVQTYENHSMTMSINLVVSTVCKFVGQEKQRPATSQTTELKNPRSWHGDSGMKEIMLLLDKDSIRRGITFTADVGLMESPLGFQFSFNLYNGNNHSYYALHLQFVEASYIDIINSFMTIIVCPFQVKKLHQHRCSGSEMTGEVKRNSERRGQQRDSSCLALGIPPNRITSHSVPTLMLARVCNHRSMVEGQARASTRAHCEVGFVCGVGVVVVVHDSAASFVLLLIIIVSGGGEYCVWRCWILVQEWWYICALMMIDVC 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00336 685 SUPERFAMILY RING/U-box 53 129 - -
Vimu11g00336 685 SMART Ubox_2 62 125 IPR003613 GO:0004842|GO:0016567
Vimu11g00336 685 Pfam U-box domain 59 129 IPR003613 GO:0004842|GO:0016567
Vimu11g00336 685 CDD RING-Ubox_PUB 60 110 IPR045210 -
Vimu11g00336 685 ProSiteProfiles U-box domain profile. 58 132 IPR003613 GO:0004842|GO:0016567
Vimu11g00336 685 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 132 IPR013083 -
Vimu11g00336 685 PANTHER WDSAM1 PROTEIN 55 422 IPR045185 GO:0061630
Vimu11g00336 685 SUPERFAMILY ARM repeat 229 422 IPR016024 -
Vimu11g00336 685 Gene3D - 133 473 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00336 Vimu-Chr11 3539415 3543808 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00336 1 426 U-box Gene Family AT3G49810 69.355 0.0 580
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00336 - - gmx:100781741 716.457