LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu11g00336	ATGGCAATGTTTCAGCCTACTTGTAAGAGGGATGGGATCGAGGGCCAGATTCTAGATCTGGACACGGCGGTGAAAGATGGGGTTTTGGGCGGGGTGGATTCTGGGGTTGTGGGGACTGGGGTTGGTGAAAAACTGGATCTTGGGAGAATGATTGAAGAGTTAGACTTGTGTGAAGTTCCCTCTGTGTTCATTTGCCCAATTTCCCTTGAGCCAATGCAGGACCCTGTGACTCTTTGCACGGGTCAGACCTACGAGAGGTCCAACATTCTCAAATGGTTCAGTCTGGGACACTTCACTTGCCCCACAACAATGCAAGAGCTCTGGGACGATTCCATCACACCAAACACCACTCTCTACCGTTTGATATCCACCTGGTTTTCTCAGAAGTACCTAGTGATGAAGAAGAGATCAGAAGACGTCCATGGGAGGGTGTCGGAGCTTGTTGAGACTCTCAAGAAGGTGAAGGGGCAAGCTCGTGTTCTTGCCCTTAAGGAACTCCATCAAGTGGTGGCTGTTCATGCCACTGCCCGCAAGGCATTGGTCGATGGCGATGGAGTGTCCGTGGTGTCGGCGTTGCTCGGTCCTTTTACTTCCCATGCGGTTGGCTCCGAGGTCATTGGTGTTCTCGTGAGTTTGAACCTTGATTGTGAGTCCAAGAGGAATCTACTGCAGCCTGCAAGGGTTTCCCTGATGGTGGACATTTTGAATGAGGGTTCAATTGAGACGAAGATCAATTGCACGCGGCTGATTGAGACATTGATTGAAGGGAAGGATTTCAAGTTGGAGATTTTCAGGAGCCATAGTCTTTTGGTTGGATTGATGAGGCTCGTGAAAGACAAAAGGCATTCAAATGGAATTTGCCCTGGATTGAGGCTCCTCAGAACAGTGTGCTTGCATTCAGAAGTTAAGAGTTTGCTGGTAAGCATTGGGGCTGTTTCTCAATTGGTTGAGTTGTTGTCTGGTTTGGAGCCCGAATGTTTGGAATTGGCTCTTTCTATCTTGGATGCACTGGCTTCTGTTCCAGAAGGAAGATTAGCTTTGAAGAATTGTTCTAATACGATACACGTTATGGTGAAACTGTTGATGCGGGTCTCAGAAAACTGTACTCAATATGCGTTATCAATACTGTGGTCTGTGTGCAAGCTGGCACCTGAGGAGTGCTCTTTGATCGCTGTGGAAGCAGGACTTGCTGCAAAACTTCTCCTTGTGATCCAAAGCGGTTGCAATCCTATATTGAAACAACAGTCGGCTGAGCTTTTGAAATACAATCTTCATTTCCAAGTGCAAACTTACGAGAACCATTCAATGACCATGAGTATTAACCTGGTTGTATCAACAGTTTGTAAATTTGTAGGGCAAGAGAAGCAGAGACCAGCTACTTCACAGACTACAGAACTAAAGAACCCCAGAAGTTGGCATGGGGATAGTGGGATGAAAGAAATCATGCTGTTGTTGGATAAAGATTCTATTAGGAGAGGGATCACATTCACAGCTGATGTGGGGCTTATGGAGAGCCCCTTAGGCTTTCAATTTTCATTTAATCTGTACAATGGAAATAACCATTCTTATTATGCACTGCACCTGCAATTTGTTGAAGCAAGTTATATTGATATTATTAATTCTTTTATGACAATTATTGTGTGTCCTTTCCAAGTGAAGAAACTACATCAGCATCGTTGTTCAGGCAGCGAAATGACAGGAGAGGTGAAAAGAAACAGTGAAAGGCGTGGACAGCAGAGAGATAGCAGCTGTTTGGCCTTAGGAATACCTCCAAATCGGATAACATCCCACTCTGTTCCAACACTCATGCTGGCGCGTGTATGTAATCATAGATCCATGGTGGAAGGACAAGCTAGAGCTAGTACTCGTGCACATTGTGAAGTTGGGTTCGTGTGTGGTGTTGGAGTTGTCGTGGTGGTTCATGATAGCGCTGCTTCATTTGTATTGCTTTTGATTATTATTGTGTCTGGAGGTGGTGAATATTGTGTGTGGAGGTGTTGGATCTTGGTGCAAGAGTGGTGGTATATATGTGCATTAATGATGATTGATGTGTGTTAG	2058	0.4538	MAMFQPTCKRDGIEGQILDLDTAVKDGVLGGVDSGVVGTGVGEKLDLGRMIEELDLCEVPSVFICPISLEPMQDPVTLCTGQTYERSNILKWFSLGHFTCPTTMQELWDDSITPNTTLYRLISTWFSQKYLVMKKRSEDVHGRVSELVETLKKVKGQARVLALKELHQVVAVHATARKALVDGDGVSVVSALLGPFTSHAVGSEVIGVLVSLNLDCESKRNLLQPARVSLMVDILNEGSIETKINCTRLIETLIEGKDFKLEIFRSHSLLVGLMRLVKDKRHSNGICPGLRLLRTVCLHSEVKSLLVSIGAVSQLVELLSGLEPECLELALSILDALASVPEGRLALKNCSNTIHVMVKLLMRVSENCTQYALSILWSVCKLAPEECSLIAVEAGLAAKLLLVIQSGCNPILKQQSAELLKYNLHFQVQTYENHSMTMSINLVVSTVCKFVGQEKQRPATSQTTELKNPRSWHGDSGMKEIMLLLDKDSIRRGITFTADVGLMESPLGFQFSFNLYNGNNHSYYALHLQFVEASYIDIINSFMTIIVCPFQVKKLHQHRCSGSEMTGEVKRNSERRGQQRDSSCLALGIPPNRITSHSVPTLMLARVCNHRSMVEGQARASTRAHCEVGFVCGVGVVVVVHDSAASFVLLLIIIVSGGGEYCVWRCWILVQEWWYICALMMIDVC	685

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu11g00336	685	SUPERFAMILY	RING/U-box	53	129	-	-
	Vimu11g00336	685	SMART	Ubox_2	62	125	IPR003613	GO:0004842\|GO:0016567
	Vimu11g00336	685	Pfam	U-box domain	59	129	IPR003613	GO:0004842\|GO:0016567
	Vimu11g00336	685	CDD	RING-Ubox_PUB	60	110	IPR045210	-
	Vimu11g00336	685	ProSiteProfiles	U-box domain profile.	58	132	IPR003613	GO:0004842\|GO:0016567
	Vimu11g00336	685	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	58	132	IPR013083	-
	Vimu11g00336	685	PANTHER	WDSAM1 PROTEIN	55	422	IPR045185	GO:0061630
	Vimu11g00336	685	SUPERFAMILY	ARM repeat	229	422	IPR016024	-
	Vimu11g00336	685	Gene3D	-	133	473	IPR011989	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu11g00336	Vimu-Chr11	3539415	3543808	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu11g00336	1	426	U-box Gene Family	AT3G49810	69.355	0.0	580

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu11g00336	-		-	gmx:100781741	716.457

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