Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00329 ATGCTCACCACCCTCCCTCCCTCCGAACCCCTCGCGGCCAACCCATTCTTCGCCTTTTCTGTAGACTTCACCGCCTGGGAGGACGACTCCCACCACCTCTTCTCCCCCAAACCCGTCACTTCCAGCTCCGGCTCCGACAAACCGGAGCCGGAGCCAGCTGAACCGGACCACCCCGTGGTCTCGGTGGTGGACGAGCGGAAACTTCGGCGCATGATATCGAACCGCGAATCTGCCCGCAGGTCTCGCATGCGAAAACAGAGACACCTGGAGAACCTTCGGAACCAGTTGAACAAGTGCAGGGTCGAAAACCGGGAACTGAATAACCGGTTGCAGTTCGTCCTGCACCACTGTAACCGCCTCCGAACCGAAAACGAATGGCTCCGGTCCCAGCGAACCTTCCTCCTCCAAAAAGTCGCCAACTTAACCCAAATTTTGATTTTCCAACAATTCCAACAACCCATCTCCCCTGCATGGACATGCAACACTTCGCTCATCCCAATTAATCAAGTTAATTAA 516 0.5562 MLTTLPPSEPLAANPFFAFSVDFTAWEDDSHHLFSPKPVTSSSGSDKPEPEPAEPDHPVVSVVDERKLRRMISNRESARRSRMRKQRHLENLRNQLNKCRVENRELNNRLQFVLHHCNRLRTENEWLRSQRTFLLQKVANLTQILIFQQFQQPISPAWTCNTSLIPINQVN 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00329 171 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 64 127 IPR004827 GO:0003700|GO:0006355
Vimu11g00329 171 FunFam BZIP transcription factor 64 115 - -
Vimu11g00329 171 SUPERFAMILY Leucine zipper domain 66 118 IPR046347 GO:0003700|GO:0006355
Vimu11g00329 171 CDD bZIP_plant_GBF1 67 118 IPR045314 GO:0003700|GO:0006355
Vimu11g00329 171 Coils Coil 75 109 - -
Vimu11g00329 171 SMART brlzneu 62 126 IPR004827 GO:0003700|GO:0006355
Vimu11g00329 171 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 69 84 IPR004827 GO:0003700|GO:0006355
Vimu11g00329 171 Gene3D - 64 115 - -
Vimu11g00329 171 PANTHER BZIP TRANSCRIPTION FACTOR 44 40 148 - -
Vimu11g00329 171 Pfam bZIP transcription factor 66 125 IPR004827 GO:0003700|GO:0006355
Vimu11g00329 171 MobiDBLite consensus disorder prediction 34 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00329 Vimu-Chr11 3411543 3412058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00329 1 149 bZIP Transcription Factor Family AT3G49760 40.625 1.00e-29 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vimu11g00329 bZIP_1 1.1e-07 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00329 - - gmx:100809244 215.698