Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00324 ATGAAGAGCATGGAAAATGATGACTCTGTTGACCTTAATAATCAAAATAACTGGTTGGGTTTCTCACTCTCTCCTCAAATGAACGTAGGTGTTGCTTCACACCCCCAACCTTCCTCTGCTGCTGATGTGGTTCCTACAAGTTTTTACCACACTGCACCACTTAATAACTACGGCTTCTACTATGGACTTGAAGCTGAAAATGTTGGATTATATTCAGCTTTGCCTATCATGCCCCTCAAATCTGATGGCTCTCTCTATGGAATGGAAGCTCTGAGCAGGTCACAAACACAAGCAATGGCTACTACATCAACTCCAAAACTGGAGAATTTCTTAGGTGGGGAAGCGATGGGGACCCCTCACTATGAATGTAATGTCACAGAAACAATTCCTCTGAGCCTAGACAGTGTGTTTTACAACCAATCCTCACGCCGTGACCCAAATAACCAAACTTTCCAAAACCATGTCCAACACATTACCACTCCACAACAACATCAGCAAGACCTTCAAGCCCAACACTTATCATATTACTCTACCTTGAGAAACCATGATATGATGTTAGAAGGGTCGAAGCAAAGTCAAACCTCAGACAGCAATCTTCAGGTTCCAAACATGGGTGATGATGGAGTTCCTGCTTCTGGTCTTAAGAGTTGGGGAGTAAGGAACTTCCAAACTAGCCATGCAGAGGACTCAAAGTTGATTGTTCCTGTGGAGGAAAATGGTGGTGAATCAGGGTCCATAGGATCAATGGCTTATGGGGATTTGCAGTCTTTAAGCTTGTCCATGAGTCCTAGCTCACAATCCAGTTGTGTGACTAGTTCGCACCGCACATCACCTGCTGTCATTGATTCTGTTGCCATGGATACAAAGAAAAGGGGACCTGAAAAGGTTGACCAGAAGCAGATAATTCATAGGAAGTCGATTGACACCTTTGGACAAAGAACCTCTCAATATAGAGGTGTGACAAGACATAGGTGGACTGGTAGGTATGAAGCTCATCTATGGGACAACAGCTGCAAGAAAGAGGGCCAAAGCAGGAAAGGAAGACAAGGGGGTTATGATATGGAAGAAAAAGCTGCGAGAGCTTATGATCTGGCCGCACTCAAGTATTGGGGACCCTCCACTCACATAAACTTCCCTTTGGAAAATTATCAAAATGAACTTGAGGAAATGAAGAACATGACGAGACAGGAGTATGTTGCTCATTTAAGAAGAAAAAGCAGCGGATTCTCAAGAGGGGCTTCAATGTACAGAGGAGTAACAAGACACCACCAACATGGAAGGTGGCAAGCACGAATTGGTAGAGTGGCTGGAAACAAAGATCTATATCTAGGAACCTTCAGTACACAAGAGGAAGCAGCTGAAGCCTATGACATTGCTGCTATAAAATTCCGAGGAGTGAATGCTGTAACCAACTTTGACATAACAAGATATGACGTGGAGAAAATCATGGCAAGCAGCAACCTTCTTAGCAGTGAGCTAGCTAGGCGCAACCGAGAGACAGACAGTGGAACTCAGTATATTGATCATAATCATAAATCTTCTGCGTATGATGATACTCAAGAAGCTATTCTAATGCAGAAGAGCTGTGAAAGTCAAAATGATCAGTGGAAGATGACTCCCTATCAATCCTCTCAACAACTTGACCAGAATCCACCTAGAACTGAGAGTGACAGAACTAACCAATCCTTCTCAGTGGCTTTGGACAACATGTTTCATCAAGAAGTAGAGGAATCAAGAAAGGTGAGAACGCATGTGTCAAATCCTTCTTCACTGGCCACAAGTTTGAATAGCTCAAGAGAAGGTAGCCCTGATAGGACAAGCTTGCCAATGCTCTCTGGAATGCCTTCAACTGCGTCAAAATTATTGTCTACCAATCCAAACAACGTGAATTCTTGGGATCCTTCACCCCATTTGAGGCCTGCTCTTTCTTTGCCTCAGATGCCAGTTTTTGCTGCTTGGACAGATGCATAG 1971 0.4373 MKSMENDDSVDLNNQNNWLGFSLSPQMNVGVASHPQPSSAADVVPTSFYHTAPLNNYGFYYGLEAENVGLYSALPIMPLKSDGSLYGMEALSRSQTQAMATTSTPKLENFLGGEAMGTPHYECNVTETIPLSLDSVFYNQSSRRDPNNQTFQNHVQHITTPQQHQQDLQAQHLSYYSTLRNHDMMLEGSKQSQTSDSNLQVPNMGDDGVPASGLKSWGVRNFQTSHAEDSKLIVPVEENGGESGSIGSMAYGDLQSLSLSMSPSSQSSCVTSSHRTSPAVIDSVAMDTKKRGPEKVDQKQIIHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQNELEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDITRYDVEKIMASSNLLSSELARRNRETDSGTQYIDHNHKSSAYDDTQEAILMQKSCESQNDQWKMTPYQSSQQLDQNPPRTESDRTNQSFSVALDNMFHQEVEESRKVRTHVSNPSSLATSLNSSREGSPDRTSLPMLSGMPSTASKLLSTNPNNVNSWDPSPHLRPALSLPQMPVFAAWTDA 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00324 656 SUPERFAMILY DNA-binding domain 315 381 IPR016177 GO:0003677
Vimu11g00324 656 FunFam AP2-like ethylene-responsive transcription factor ANT 315 381 - -
Vimu11g00324 656 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 103 553 - -
Vimu11g00324 656 MobiDBLite consensus disorder prediction 584 608 - -
Vimu11g00324 656 FunFam AP2-like ethylene-responsive transcription factor 414 475 - -
Vimu11g00324 656 Pfam AP2 domain 316 371 IPR001471 GO:0003700|GO:0006355
Vimu11g00324 656 Pfam AP2 domain 416 465 IPR001471 GO:0003700|GO:0006355
Vimu11g00324 656 ProSiteProfiles AP2/ERF domain profile. 415 473 IPR001471 GO:0003700|GO:0006355
Vimu11g00324 656 CDD AP2 315 379 IPR001471 GO:0003700|GO:0006355
Vimu11g00324 656 MobiDBLite consensus disorder prediction 576 608 - -
Vimu11g00324 656 SMART rav1_2 316 385 IPR001471 GO:0003700|GO:0006355
Vimu11g00324 656 SMART rav1_2 415 479 IPR001471 GO:0003700|GO:0006355
Vimu11g00324 656 Gene3D AP2/ERF domain 415 475 IPR036955 GO:0003700|GO:0006355
Vimu11g00324 656 Gene3D AP2/ERF domain 315 381 IPR036955 GO:0003700|GO:0006355
Vimu11g00324 656 CDD AP2 414 475 IPR001471 GO:0003700|GO:0006355
Vimu11g00324 656 ProSiteProfiles AP2/ERF domain profile. 316 379 IPR001471 GO:0003700|GO:0006355
Vimu11g00324 656 SUPERFAMILY DNA-binding domain 414 474 IPR016177 GO:0003677
Vimu11g00324 656 Coils Coil 380 400 - -
Vimu11g00324 656 PRINTS Ethylene responsive element binding protein signature 455 475 IPR001471 GO:0003700|GO:0006355
Vimu11g00324 656 PRINTS Ethylene responsive element binding protein signature 317 328 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00324 Vimu-Chr11 3355874 3359800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00324 396 656 AP2-EREBP Transcription Factor Family AT4G37750 25.817 9.13e-16 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vimu11g00324 AP2 4.3e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00324 K09285 - gmx:100787611 1109.36