Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00308 ATGGAGGATTCACATAAGAGTGAAGCAGAGAAAGAGAAAGGAGGTGAAGAAGTGAAATACCGTGGTGTGAAAAAGAGGCCAAGAAATCTTACGGGAAGACAGTGGTTAGGAACATTTAACACAGCAGAAGAAGCAGCTAGAGCTTATGATCGTGCAACACTTCAATTGAGGGGTGCACTTTCCCAAATTATTCCCTTTCTTCTACAACCTTCCAAAGGAGGGCAAGGAGCTGCAGGCAGCCGTTTGCCGGGGATACCAAAGTTCGGAGTGGTGGTGATAGAGAAGGGCGTGTCACAGGGAGTGACCGCGCATAAAAGGGTTGAACCGCTGCGTACGGTGTGGACGACATCGCCGATGACGCTGTTGGTCGGCAGAAAGAATACACGTCGTATTCTGCACCGTTGA 405 0.4938 MEDSHKSEAEKEKGGEEVKYRGVKKRPRNLTGRQWLGTFNTAEEAARAYDRATLQLRGALSQIIPFLLQPSKGGQGAAGSRLPGIPKFGVVVIEKGVSQGVTAHKRVEPLRTVWTTSPMTLLVGRKNTRRILHR 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00308 134 CDD AP2 19 63 IPR001471 GO:0003700|GO:0006355
Vimu11g00308 134 SMART rav1_2 19 71 IPR001471 GO:0003700|GO:0006355
Vimu11g00308 134 SUPERFAMILY DNA-binding domain 19 60 IPR016177 GO:0003677
Vimu11g00308 134 ProSiteProfiles AP2/ERF domain profile. 19 67 IPR001471 GO:0003700|GO:0006355
Vimu11g00308 134 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 6 66 - -
Vimu11g00308 134 MobiDBLite consensus disorder prediction 1 25 - -
Vimu11g00308 134 Gene3D AP2/ERF domain 18 64 IPR036955 GO:0003700|GO:0006355
Vimu11g00308 134 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00308 Vimu-Chr11 3187156 3187939 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00308 1 59 AP2-EREBP Transcription Factor Family AT1G28370 44.928 5.77e-11 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu11g00308 AP2 0.00012 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00308 - - gmx:100796977 80.4925