Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00303 ATGCGACTCTTCCTCTGTTCTCTCTTCTTCTTCTTCTTCCTTTTCCATTCTCACAAACTCCATGCTGCGCGCATCTCAGAATATCGTGCGCTTCTATCTTTTAAAGCATCTTCCATAACCGACGACCCAACCAATGCTCTCTCCTCCTGGAACACCACAACCCCCTACTGTTCCTGGTTCGGTGTCACGTGCGACTCTCGCCGCCACGTCACCACCCTTAACCTCACCTCCTTGTCCCTCTCCGGCACACTCTACGATGACCTCTCCCACCTCCCTTTCCTCTCCTATCTCTCCCTCGCCGACAACCAGTTCTCTGGCCCCATCCCCTCCTCCTTCTCCGCATTCTCCGTCCTCCGCCATCTCAACCTCTCTAACAACGCCTTCAACGCCACCTTCCCCTCCAACCTCGCCCGCCTCGCCAATCTCCAAGTCCTTGACCTCTACAACAACAACATGACCGGTCCCCTCCCCCTCGCCGTCGCCGCCATGCCCCTCCTCCGTCACCTCCACCTCGGCGGCAACTTTTTCTCCGGCCAGATCCCTCCCGAGTATGGCACCTGGCAGCACCTCCAGTACCTCGCCGTCTCCGGCAACGAGCTCACGGGAAATATCCCTCCGGAGCTTGGAAACCTCACCGCGCTTCGCGAGCTCTACATTGGCTACTACAATGCTTACTCCGGCGGCATCCCGCCGGAGATTGGAAACCTGTCTCAGCTTGTCCGTTTCGACGCCGCGTATTGCGGTCTCTCCGGCGATATTCCGGCTGACCTCGGAAGGCTTCAGAATATGGACACGCTCTTTCTTCAGGTGAATGCGCTCTCCGGCTCGCTAACTCCTGAGCTGGGGAACTTGAAGAGTCTCAAGTCGATGGATCTGTCCAACAACGTTCTCTCCGGCGAGGTTCCGGCGAGCTTTGCGGAGCTCAAGAATCTCACTCTGCTTAACCTCTTCCGGAACAAGCTCCACGGTGCGATTCCAGAATTTGTCGGAGACCTACCGGCGCTGGAGGTTTTGCAGCTATGGGAGAACAATTTCACGGGAAGCATTCCTCAGAGTTTGGGAAGAAATGGAAAACTCACTGTCGTTGATCTTTCTTCGAACAAGTTGACGGGAATGCTTCCTCCTGATATGTGTTACGGGAATCGTCTACAGACTCTGATAACTCTTGGGAATTATCTGCTCGGTCCCATTCCTGATTCGCTTGGGAAGTGCCAGTCTCTGAATAGGATTCGAATGGGGGAGAACTTTCTTAATGGTTCTATTCCTGTTGGTCTATTTGGGCTTCCCAAACTCACCCAAGTAGAGCTTCAGAACAATCTTCTCACTGGACAGTTTCCTGAGGGTGGTTCCGTTGCTATTAATCTCGGTCAGATCAGTCTCTCTAATAACAAGCTCTCTGGGCCGTTGCCACCCACCATTGGAAACTTCACCAGCATGCAGAAGCTTCTTCTCGACGGTAACAAGTTCTCGGGTCAAATCCCTTCGCAGATAGGCAGGCTGCAGCAGCTTTCCAAGATTGATTTTAGCCATAATCAGTTTTCGGGCCCCATTGCTCCCGAGATAAGCAGGTGCAAGCTTTTGACCTTCATTGACCTCAGCCGCAATGAGCTCTCTGGTGAGATTCCAAATCAGATAACTGCCATGCGGATATTGAATTATCTCAACCTTTCAAGAAACCATTTAGTTGGCTCAATTCCAGGCTCCATAGCTTCTATGCAAAGTTTAACCTCTGTTGATTTTTCCTACAACAATCTCTCTGGTTTGGTTCCTGGAACCGGGCAGTTCGGCTACTTTAACTATACCTCTTTCCTGGGGAACACTGAACTCTGTGGTCCTTATTTGGGTCCTTGTAAAGACGGGGTTGCCAATGGCCCTCGTCAACCTCATGTTAAAGGTCCTCTCTCTTCTTCGTTGAAGCTTCTGTTAGTTATAGGATTGCTTGTGTGCTCCATCGCATTTGCTGTTGCGGCAATAATCAAAGCTCGGGCTTTGAAAAAGGCTAGTGAAGCTCGTGCGTGGAAATTAACTGCGTTCCAGCGTTTGGACTTCACTGCTGATGATGTTCTGGACTGCTTGAAGGAGGACAACATAATAGGAAAAGGAGGTGCGGGCATTGTGTACAAAGGTGCAATGCCGAATGGGGATCAGGTTGCTGTGAAAAGGTTACCTGCCATGAGCAGGGGATCTTCACATGATCATGGTTTCAATGCTGAGATTCAAACTTTGGGGAGGATTCGACACAGACACATTGTTAGACTGTTGGGTTTCTGTTCAAACCACGAGACAAATCTCTTGGTGTATGAGTATATGCCTAATGGAAGTTTGGGTGAGGTTCTTCATGGCAAGAAAGGTGGTCATTTGCATTGGGATACAAGGTATAAGATTGCTGTGGAGGCCGCCAAAGGCCTGTGCTATCTACATCATGACTGCTCGCCACTCATTGTCCATCGAGATGTTAAATCCAACAATATCCTTCTTGATTCTAACTTTGAAGCTCATGTTGCGGACTTTGGGCTCGCTAAGTTCCTGCAAGATTCTGGAACATCTGAATGCATGTCTGCAATTGCCGGTTCGTATGGATACATAGCTCCAGGTAATATTCTGAAATTCAACATAATTGATGATTTATACGTTGAACTAGCGTGA 2646 0.4996 MRLFLCSLFFFFFLFHSHKLHAARISEYRALLSFKASSITDDPTNALSSWNTTTPYCSWFGVTCDSRRHVTTLNLTSLSLSGTLYDDLSHLPFLSYLSLADNQFSGPIPSSFSAFSVLRHLNLSNNAFNATFPSNLARLANLQVLDLYNNNMTGPLPLAVAAMPLLRHLHLGGNFFSGQIPPEYGTWQHLQYLAVSGNELTGNIPPELGNLTALRELYIGYYNAYSGGIPPEIGNLSQLVRFDAAYCGLSGDIPADLGRLQNMDTLFLQVNALSGSLTPELGNLKSLKSMDLSNNVLSGEVPASFAELKNLTLLNLFRNKLHGAIPEFVGDLPALEVLQLWENNFTGSIPQSLGRNGKLTVVDLSSNKLTGMLPPDMCYGNRLQTLITLGNYLLGPIPDSLGKCQSLNRIRMGENFLNGSIPVGLFGLPKLTQVELQNNLLTGQFPEGGSVAINLGQISLSNNKLSGPLPPTIGNFTSMQKLLLDGNKFSGQIPSQIGRLQQLSKIDFSHNQFSGPIAPEISRCKLLTFIDLSRNELSGEIPNQITAMRILNYLNLSRNHLVGSIPGSIASMQSLTSVDFSYNNLSGLVPGTGQFGYFNYTSFLGNTELCGPYLGPCKDGVANGPRQPHVKGPLSSSLKLLLVIGLLVCSIAFAVAAIIKARALKKASEARAWKLTAFQRLDFTADDVLDCLKEDNIIGKGGAGIVYKGAMPNGDQVAVKRLPAMSRGSSHDHGFNAEIQTLGRIRHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKGGHLHWDTRYKIAVEAAKGLCYLHHDCSPLIVHRDVKSNNILLDSNFEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPGNILKFNIIDDLYVELA 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00303 881 SUPERFAMILY L domain-like 358 617 - -
Vimu11g00303 881 Gene3D Ribonuclease Inhibitor 331 622 IPR032675 -
Vimu11g00303 881 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 21 84 - -
Vimu11g00303 881 Pfam Protein kinase domain 694 867 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00303 881 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 661 769 - -
Vimu11g00303 881 SUPERFAMILY Protein kinase-like (PK-like) 688 868 IPR011009 -
Vimu11g00303 881 Gene3D Phosphorylase Kinase; domain 1 659 769 - -
Vimu11g00303 881 Pfam Leucine rich repeat 118 174 IPR001611 GO:0005515
Vimu11g00303 881 Gene3D Ribonuclease Inhibitor 185 261 IPR032675 -
Vimu11g00303 881 Gene3D Ribonuclease Inhibitor 262 330 IPR032675 -
Vimu11g00303 881 ProSitePatterns Serine/Threonine protein kinases active-site signature. 814 826 IPR008271 GO:0004672|GO:0006468
Vimu11g00303 881 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 166 875 - -
Vimu11g00303 881 SMART serkin_6 692 878 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00303 881 ProSiteProfiles Protein kinase domain profile. 692 881 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00303 881 FunFam Protein kinase superfamily protein 770 842 - -
Vimu11g00303 881 SUPERFAMILY RNI-like 73 394 - -
Vimu11g00303 881 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 85 328 - -
Vimu11g00303 881 Gene3D Ribonuclease Inhibitor 25 184 IPR032675 -
Vimu11g00303 881 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Vimu11g00303 881 Gene3D Transferase(Phosphotransferase) domain 1 770 872 - -
Vimu11g00303 881 SMART LRR_typ_2 572 595 IPR003591 -
Vimu11g00303 881 SMART LRR_typ_2 476 500 IPR003591 -
Vimu11g00303 881 SMART LRR_typ_2 332 356 IPR003591 -
Vimu11g00303 881 SMART LRR_typ_2 163 189 IPR003591 -
Vimu11g00303 881 SMART LRR_typ_2 284 307 IPR003591 -
Vimu11g00303 881 SMART LRR_typ_2 115 139 IPR003591 -
Vimu11g00303 881 SMART LRR_typ_2 357 380 IPR003591 -
Vimu11g00303 881 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 336 621 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00303 Vimu-Chr11 3135810 3138455 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00303 17 877 Receptor kinase-like Gene Family AT5G65700 79.147 0.0 1384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vimu11g00303 Pkinase 3.2e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00303 - - vum:124844178 1654.8