Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00302 ATGGCTGAAGACTGGCTCAGTCCTCATCCACTCACACTGGTCAGGGAATATCGTGCGCTTCTATCTTTTAAAGCATCTTCCATAACCGACGACCCAACCAATGCTCTCTCCTCCTGGAACACCACAACCCCCTACTGTTCCTGGTTCGGTGTCACGTGCGACTCTCGCCGCCACGTCACCACCCTTAACCTCACCTCCTTGTCCCTCTCCGGCACACTCTACGATGACCTCTCCCACCTCCCTTTCCTCTCCTATCTCTCCCTCGCCGACAACCAGTTCTCTGGCCCCATCCCCTCCTCCTTCTCCGCATTCTCCGTCCTCCGCCATCTCAACCTCTCTAACAACGCCTTCAACGCCACCTTCCCCTCCAACCTCGCCCGCCTCGCCAATCTCCAAGTCCTTGACCTCTACAACAACAACATGACCGGTCCCCTCCCCCTCGCCGTCGCCGCCATGCCCCTCCTCCGTCACCTCCACCTCGGCGGCAACTTTTTCTCCGGCCAGATCCCTCCCGAGTATGGCACCTGGCAGCACCTCCAGTACCTCGCCGTCTCCGGCAACGAGCTCACGGGAAATATCCCTCCGGAGCTTGGAAACCTCACCGCGCTTCGCGAGCTCTACATTGGCTACTACAATGCTTACTCCGGCGGCATCCCGCCGGAGATTGGAAACCTGTCTCAGCTTGTCCGTTTCGACGCCGCGTATTGCGGTCTCTCCGGCGATATTCCGGCTGACCTCGGAAGGCTTCAGAATATGGACACGCTCTTTCTTCAGGTGAATGCGCTCTCCGGCTCGCTAACTCCTGAGCTGGGGAACTTGAAGAGTCTCAAGTCGATGGATCTGTCCAACAACGTTCTCTCCGGCGAGGTTCCGGCGAGCTTTGCGGAGCTCAAGAATCTCACTCTGCTTAACCTCTTCCGGAACAAGCTCCACGGTGCGATTCCAGAATTTGTCGGAGACCTACCGGCGCTGGAGGTTTTGCAGCTATGGGAGAACAATTTCACGGGAAGCATTCCTCAGAGTTTGGGAAGAAATGGAAAACTCACTGTCGTTGATCTTTCTTCGAACAAGTTGACGGGAATGCTTCCTCCTGATATGTGTTACGGGAATCGTCTACAGACTCTGATAACTCTTGGGAATTATCTGCTCGGTCCCATTCCTGATTCGCTTGGGAAGTGCCAGTCTCTGAATAGGATTCGAATGGGGGAGAACTTTCTTAATGGTTCTATTCCTGTTGGTCTATTTGGGCTTCCCAAACTCACCCAAGTAGAGCTTCAGAACAATCTTCTCACTGGACAGTTTCCTGAGGGTGGTTCCGTTGCTATTAATCTCGGTCAGATCAGTCTCTCTAATAACAAGCTCTCTGGGCCGTTGCCACCCACCATTGGAAACTTCACCAGCATGCAGAAGCTTCTTCTCGACGGTAACAAGTTCTCGGGTCAAATCCCTTCGCAGATAGGCAGGCTGCAGCAGCTTTCCAAGATTGATTTTAGCCATAATCAGTTTTCGGGCCCCATTGCTCCCGAGATAAGCAGGTGCAAGCTTTTGACCTTCATTGACCTCAGCCGCAATGAGCTCTCTGGTGAGATTCCAAATCAGATAACTGCCATGCGGATATTGAATTATCTCAACCTTTCAAGAAACCATTTAGTTGGCTCAATTCCAGGCTCCATAGCTTCTATGCAAAGTTTAACCTCTGTTGATTTTTCCTACAACAATCTCTCTGGTTTGGTTCCTGGAACCGGGCAGTTCGGCTACTTTAACTATACCTCTTTCCTGGGGAACACTGAACTCTGTGGTCCTTATTTGGGTCCTTGTAAAGACGGGGTTGCCAATGGCCCTCGTCAACCTCATGTTAAAGGTCCTCTCTCTTCTTCGTTGAAGCTTCTGTTAGTTATAGGATTGCTTGTGTGCTCCATCGCATTTGCTGTTGCGGCAATAATCAAAGCTCGGGCTTTGAAAAAGGCTAGTGAAGCTCGTGCGTGGAAATTAACTGCGTTCCAGCGTTTGGACTTCACTGCTGATGATGTTCTGGACTGCTTGAAGGAGGACAACATAATAGGAAAAGGAGGTGCGGGCATTGTGTACAAAGGTGCAATGCCGAATGGGGATCAGGTTGCTGTGAAAAGGTTACCTGCCATGAGCAGGGGATCTTCACATGATCATGGTTTCAATGCTGAGATTCAAACTTTGGGGAGGATTCGACACAGACACATTGTTAGACTGTTGGGTTTCTGTTCAAACCACGAGACAAATCTCTTGGTGTATGAGTATATGCCTAATGGAAGTTTGGGTGAGGTTCTTCATGGCAAGAAAGGTGGTCATTTGCATTGGGATACAAGGTATAAGATTGCTGTGGAGGCCGCCAAAGGCCTGTGCTATCTACATCATGACTGCTCGCCACTCATTGTCCATCGAGATGTTAAATCCAACAATATCCTTCTTGATTCTAACTTTGAAGCTCATGTTGCGGACTTTGGGCTCGCTAAGTTCCTGCAAGATTCTGGAACATCTGAATGCATGTCTGCAATTGCCGGTTCGTATGGATACATAGCTCCAGGTAATATTCTGAAATTCAACATAATTGATGATTTATACGTTGAACTAGCCTTGTCTCATGTCCCTCAACATCATTGGCTTAGGGGTAGAACCGAACTGTATCAACACTGTTGTTTGTTTGTGATTTTGACTGCAGAGTATGCCTACACGTTAAAAGTTGACGAGAAAAGCGACGTTTACAGCTTTGGAGTTGTTCTTTTGGAGCTTGTAACAGGCAGGAAACCAGTTGGGGAGTTTGGTGATGGTGTGGACATTGTGCAATGGGTGAGGAAAATGACGGATTCAAACAAGGAAGGAGTTCTAAAGGTTCTTGATCCTAGACTTCCATCAGTTCCTCTCCATGAGGTGATGCATGTTTTCTATGTAGCCATGCTATGTGTTGAAGAACAGGCAGTGGAGCGACCTACGATGCGAGAAGTTGTTCAAATTCTCACCGAGCTTCCAAAGCCACCAAGCTCTAAACAGGGGGACTTAACGGAGTCCTCTCTGTCATCATCAAACATTTTAGAGTCTCCAACCACGGCATCTAAGGAACCTAAAGATAATCAACGTCCTCCTCAGTCTTCACCACCCGATCTTCTTAGCATTTGA 3150 0.4927 MAEDWLSPHPLTLVREYRALLSFKASSITDDPTNALSSWNTTTPYCSWFGVTCDSRRHVTTLNLTSLSLSGTLYDDLSHLPFLSYLSLADNQFSGPIPSSFSAFSVLRHLNLSNNAFNATFPSNLARLANLQVLDLYNNNMTGPLPLAVAAMPLLRHLHLGGNFFSGQIPPEYGTWQHLQYLAVSGNELTGNIPPELGNLTALRELYIGYYNAYSGGIPPEIGNLSQLVRFDAAYCGLSGDIPADLGRLQNMDTLFLQVNALSGSLTPELGNLKSLKSMDLSNNVLSGEVPASFAELKNLTLLNLFRNKLHGAIPEFVGDLPALEVLQLWENNFTGSIPQSLGRNGKLTVVDLSSNKLTGMLPPDMCYGNRLQTLITLGNYLLGPIPDSLGKCQSLNRIRMGENFLNGSIPVGLFGLPKLTQVELQNNLLTGQFPEGGSVAINLGQISLSNNKLSGPLPPTIGNFTSMQKLLLDGNKFSGQIPSQIGRLQQLSKIDFSHNQFSGPIAPEISRCKLLTFIDLSRNELSGEIPNQITAMRILNYLNLSRNHLVGSIPGSIASMQSLTSVDFSYNNLSGLVPGTGQFGYFNYTSFLGNTELCGPYLGPCKDGVANGPRQPHVKGPLSSSLKLLLVIGLLVCSIAFAVAAIIKARALKKASEARAWKLTAFQRLDFTADDVLDCLKEDNIIGKGGAGIVYKGAMPNGDQVAVKRLPAMSRGSSHDHGFNAEIQTLGRIRHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKGGHLHWDTRYKIAVEAAKGLCYLHHDCSPLIVHRDVKSNNILLDSNFEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPGNILKFNIIDDLYVELALSHVPQHHWLRGRTELYQHCCLFVILTAEYAYTLKVDEKSDVYSFGVVLLELVTGRKPVGEFGDGVDIVQWVRKMTDSNKEGVLKVLDPRLPSVPLHEVMHVFYVAMLCVEEQAVERPTMREVVQILTELPKPPSSKQGDLTESSLSSSNILESPTTASKEPKDNQRPPQSSPPDLLSI 1049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00302 1049 Gene3D Ribonuclease Inhibitor 74 341 IPR032675 -
Vimu11g00302 1049 Gene3D Ribonuclease Inhibitor 13 73 IPR032675 -
Vimu11g00302 1049 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 155 992 - -
Vimu11g00302 1049 MobiDBLite consensus disorder prediction 1001 1049 - -
Vimu11g00302 1049 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 12 73 - -
Vimu11g00302 1049 Pfam Leucine rich repeat 107 163 IPR001611 GO:0005515
Vimu11g00302 1049 SUPERFAMILY L domain-like 346 606 - -
Vimu11g00302 1049 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 325 610 - -
Vimu11g00302 1049 SUPERFAMILY Protein kinase-like (PK-like) 677 997 IPR011009 -
Vimu11g00302 1049 ProSitePatterns Serine/Threonine protein kinases active-site signature. 803 815 IPR008271 GO:0004672|GO:0006468
Vimu11g00302 1049 Pfam Leucine rich repeat N-terminal domain 16 54 IPR013210 -
Vimu11g00302 1049 SUPERFAMILY RNI-like 62 383 - -
Vimu11g00302 1049 Pfam Protein tyrosine and serine/threonine kinase 899 997 IPR001245 GO:0004672|GO:0006468
Vimu11g00302 1049 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 74 317 - -
Vimu11g00302 1049 Gene3D Ribonuclease Inhibitor 345 610 IPR032675 -
Vimu11g00302 1049 ProSiteProfiles Protein kinase domain profile. 681 1000 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00302 1049 Gene3D Transferase(Phosphotransferase) domain 1 759 1018 - -
Vimu11g00302 1049 FunFam Protein kinase superfamily protein 759 831 - -
Vimu11g00302 1049 Pfam Protein kinase domain 683 856 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00302 1049 SMART LRR_typ_2 561 584 IPR003591 -
Vimu11g00302 1049 SMART LRR_typ_2 321 345 IPR003591 -
Vimu11g00302 1049 SMART LRR_typ_2 465 489 IPR003591 -
Vimu11g00302 1049 SMART LRR_typ_2 152 178 IPR003591 -
Vimu11g00302 1049 SMART LRR_typ_2 273 296 IPR003591 -
Vimu11g00302 1049 SMART LRR_typ_2 104 128 IPR003591 -
Vimu11g00302 1049 SMART LRR_typ_2 346 369 IPR003591 -
Vimu11g00302 1049 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 650 758 - -
Vimu11g00302 1049 Gene3D Phosphorylase Kinase; domain 1 648 758 - -
Vimu11g00302 1049 SMART serkin_6 681 996 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00302 Vimu-Chr11 3121765 3125576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00302 14 1034 Receptor kinase-like Gene Family AT5G65700 76.585 0.0 1571
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vimu11g00302 Pkinase 4.1e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00302 - - gmx:100499646 1771.13