Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00300 ATGACACAAATCTCATCGACCGTGTACTTGCCTGAATTTGTAAGCACAGTGTTATGTTTTTTTTTTTCGCATCAACAGGGAATGGAGGACCCCACTTTGTTTCATCAATACCCGATGGATTCCTTTCCATTCCAGCTCGATGATTTTGACTTTGAGTCATTCTCCGCGTCCCCAAAGGGTTCTTCCTCTCACAAGCGCTTGAGCTCCGAAAGCACACAAAACTCTTCCCTCACTCAAAGTCCTGAAACTTCTGTTGCCCCACCAAGACCAACCAAGCAACCCAAGACTACTATGAGTACCTGGAGTGCTTACGGCACTGACATGATAGCTCCCAAGGCTGCTTCCTCTTCATCCTCCAAAATCATCTCCTTTGACAAATCCAGTGCATCTTCTGTTTCTTCCCAACAACTCTACAAACTCGATGCTGCAAAACTACTGAAGAAGCCTAAAATTGAAACTGGGTATGGTGAGAACCTGGATTTTTCTGCTGTGGCTTCTCAAAGTTTCTATGACAACAATAGTTTTCTAGACTATGATAAGCAAGAGAAAAAGGTTGCAGCTACAATGGCTAGAAACCCAACCCAAGCTCAAGATCACGTCATAGCCGAAAGAAAACGAAGGGAAAAACTCAGCCAAAGGTTCATTGCTCTTTCAGCCTTAGTTCCTGGACTCAAGAAGACGGACAAGGCTACCGTCCTGGAAGATGCTATAAAGTACGTGAAACAATTACAAGAACGGGTAAAGATTCTGGAGGAACAAACTGTGGATAGAACAGTTGAATCTGCAATCTTTGTGAAGAGATCTGTTGTCTTCTCCGGAGATGACAGCACCTACTCTGGTGAAAACTCTGACCAATCAGTCCCCGAAATCGAAGCAAGAATTTCTGGTAAAGAGGTACTCGTCAGGCTCCACTGCGACAAACACAGTGGACGAACAGCTGCTATACTAAGGGAATTAGAGAAGCATAATCTCACAGTTCAGAGTAGCAGCTTTTTGCCCTTCGGAAATAACACTCTTGACATAACTATTGTTGCTACGATGGGGAAGGACTACTGCTTGACTGCAAAAGATCTGATAAGAAGCTTAAGTCAGTGTTTGAGACAGCTTTGA 1110 0.4387 MTQISSTVYLPEFVSTVLCFFFSHQQGMEDPTLFHQYPMDSFPFQLDDFDFESFSASPKGSSSHKRLSSESTQNSSLTQSPETSVAPPRPTKQPKTTMSTWSAYGTDMIAPKAASSSSSKIISFDKSSASSVSSQQLYKLDAAKLLKKPKIETGYGENLDFSAVASQSFYDNNSFLDYDKQEKKVAATMARNPTQAQDHVIAERKRREKLSQRFIALSALVPGLKKTDKATVLEDAIKYVKQLQERVKILEEQTVDRTVESAIFVKRSVVFSGDDSTYSGENSDQSVPEIEARISGKEVLVRLHCDKHSGRTAAILRELEKHNLTVQSSSFLPFGNNTLDITIVATMGKDYCLTAKDLIRSLSQCLRQL 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00300 369 Pfam Helix-loop-helix DNA-binding domain 197 244 IPR011598 GO:0046983
Vimu11g00300 369 SMART finulus 200 249 IPR011598 GO:0046983
Vimu11g00300 369 PANTHER BHLH TRANSCRIPTION FACTOR 37 366 - -
Vimu11g00300 369 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 198 254 IPR036638 GO:0046983
Vimu11g00300 369 CDD bHLH_AtNAI1_like 196 268 - -
Vimu11g00300 369 FunFam Basic helix-loop-helix family protein 191 260 - -
Vimu11g00300 369 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 194 243 IPR011598 GO:0046983
Vimu11g00300 369 Gene3D - 186 258 IPR036638 GO:0046983
Vimu11g00300 369 MobiDBLite consensus disorder prediction 55 98 - -
Vimu11g00300 369 Coils Coil 233 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00300 Vimu-Chr11 3068651 3070683 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00300 177 366 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 48.718 9.89e-54 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu11g00300 HLH 8.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00300 - - gmx:100798011 497.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g00300 11 3068651 3070683 Vimu11g00300 11 3068651 3070683 ECH
Vimu7g02689 7 22638159 22640074 Vimu11g00300 11 3068651 3070683 PCT