Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00299 ATGACTTCAATGGAGGAATCATGGACTAGTTGGCTCTGTGATATGGAGCCAGATGATTACAGTTTCATCGGTCAATCAGACATAAAGGTGGAGGATGTTAATGGAAGTTTAGTATCTCCAAGTGATATAGCCACTGCATTAGAAGAGAACCCGCAGAGCTCATTTTCCACTGGGAGTCACTCTTCAGTGACTGAGAGTGGCATAGAAGAGAGGCCTTTGAAGTTACTCAAGACATGCACTTCAAACTCTTCAAAAATAGAACAACTATCGCAAATGAGAGCCTCCACACCCTGCTCCTATATTCTTTCCTTTGAGAACACCAATCCACCAACAGCTAAGGTTGAATCGGCTACTAAACCAGAAACCAAGGTTGTGAAACGTGGGATAGCTCTGCCTTCAAAGAATGAATCAAAACGTGTTACTCAGGAGAGCAAGAAAACGGGCTCATCAGCCAGATCTTCTCATCACACACAAGATCACATAATTGCCGAGAGAATGAGGAGAGAAAAGATTAGCCAGCAGTTCATAGCCCTCTCATCCCTTATTCCAGACCTCAAAAAGATGGACAAGGTGTCTGTATTGGTGGAAGCTATAAGGTACGTGAAGGAGTTGAAGGAAAAAGTGAAAGTGATGGAGGAACAGCGCAAAAGGAAAAGCCATGAACCGGTGATGTGTGGGAAGAAATCTCAGGTTTGTGCTGCTGCGGACGAGGATGTCTCAGACACTTCATCAAATTCCGATGAGTTCGGAAATTCTGACGATCCCTCATCCAAAACAAATCTGTTACTGCCAGAAGTAGAAGCAAGGGTGTCAAAGAAGAACGTGCTGATTCGAATCCTCTGCGAGAAAGAAAAGGCAGTGCTGGCGAACATTTTTAGAGAGATAGAGAAACTTCATCTCTCAGTCATCAATAGCAGCGCCTTATCTTTCGGCTCCTCTGTTCTCGACACAACCATCGTAGCCGAGGTACCGTACTATTGTTACTATTAA 990 0.4414 MTSMEESWTSWLCDMEPDDYSFIGQSDIKVEDVNGSLVSPSDIATALEENPQSSFSTGSHSSVTESGIEERPLKLLKTCTSNSSKIEQLSQMRASTPCSYILSFENTNPPTAKVESATKPETKVVKRGIALPSKNESKRVTQESKKTGSSARSSHHTQDHIIAERMRREKISQQFIALSSLIPDLKKMDKVSVLVEAIRYVKELKEKVKVMEEQRKRKSHEPVMCGKKSQVCAAADEDVSDTSSNSDEFGNSDDPSSKTNLLLPEVEARVSKKNVLIRILCEKEKAVLANIFREIEKLHLSVINSSALSFGSSVLDTTIVAEVPYYCYY 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00299 329 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 155 204 IPR011598 GO:0046983
Vimu11g00299 329 MobiDBLite consensus disorder prediction 128 159 - -
Vimu11g00299 329 MobiDBLite consensus disorder prediction 49 68 - -
Vimu11g00299 329 SMART finulus 161 210 IPR011598 GO:0046983
Vimu11g00299 329 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 158 222 IPR036638 GO:0046983
Vimu11g00299 329 MobiDBLite consensus disorder prediction 138 159 - -
Vimu11g00299 329 Coils Coil 194 221 - -
Vimu11g00299 329 Gene3D - 156 232 IPR036638 GO:0046983
Vimu11g00299 329 PANTHER BHLH TRANSCRIPTION FACTOR 53 323 - -
Vimu11g00299 329 Pfam Helix-loop-helix DNA-binding domain 159 204 IPR011598 GO:0046983
Vimu11g00299 329 MobiDBLite consensus disorder prediction 236 258 - -
Vimu11g00299 329 MobiDBLite consensus disorder prediction 49 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00299 Vimu-Chr11 3021654 3023695 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00299 9 322 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22750 39.130 1.12e-45 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu11g00299 HLH 1.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00299 - - gmx:100787596 424.476