Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00298 ATGGATGATGCATCAGCACCCAGCTGGTTATCTGATTTGAACATGGATGATTACAACTTATTTCCAGATGAGTGTGCCCTGAACTTGAACTTGTTTGATGACCAAGAGTTTTTACCACAAGACATTGCCAGTGCCCTTGAAGAACAGACACGGAGCCTGCAGCAATCTTTGTCTTCGGAGTGCCCTTCCAAAACTGTCAGCAACTCATCCACCGATGATACCAGTTTTGACTTTGAGAGACCAGCCAAGTTACTGAAAACGACAAGCAGTAGTTGCTGTAACTCTGACTCGTCCACCATCACCAACAACCTCTCGCCAAAACTTTCCCCATCCACGTCCTTCTCCTCCTTTCAGTCTCATATTCTGTCTTTTGACAACCCCAACTCCTCCCCTCCCATCACCACTACCACCACCCAGTTTTACGGCTTTGACGTAAACCCAACGCAGAACGAAATGGTCTCAGTGTCAGTGCCCCAATTGACAAAATCACGCTTCCCTGATCAAACGCCAAAAGGGTCCTCAAAAAATCACAACTTTGAAACAAAACCCTCACATGGTAAGAGATCTCCTGCTCACGCTCAGGATCACATCATGGCCGAGAGAAAGCGAAGAGAGAAGCTCAGCCAGAGCTTCATTGCTCTTGCAGCTCTTGTTCCTGGCCTGAAGAAGATGGATAAGGCTTCTGTGTTAGGGGACGCTATCAAATATGTGAAAGATCTTAAAGAGCGTTTGGCAGTGCTTGAAGAGCGGAGCAAAAAAACAAGGGAAGAATCGGTGGTGATCCTGAACAAGCCAGACCTCTCTGGCGATGATGATTCTTCTTCATGTGATGAGAGCATTGGTGCTGATAGTGTCAGTGACACTCAGTTTGAGGTTGAATCAAGAGTGTCAGGGAAGGAGATGCTGCTTCGGATCCACTGCCTGAAGCAAAAGGGGCTTCTCGTCAAATTACTGGCCGAGATTCAAAGAAATAACCTACTCGTTATTAATAGCAGCATCTTACCATTCGGTGATTCTATCCTTGACATTACCATAGTTGCTCAGATGGGAGAAAATTACAATTTGACTACGAAGGAACTTGTCAAGAACCTACGCGTGTCGGCAAATAAGCTAGGTTACAGTGTTCATGTGTTCCCCGAAATGCAGATGATCGATCCAAAAGCCTTTGGTCTGTGTCTGCTTGACAAAAAAAAAAAAGAAGAGTATTTGAATAATTTTGTGGAGATATTAGGAATGGTTCCAATCTGA 1248 0.4503 MDDASAPSWLSDLNMDDYNLFPDECALNLNLFDDQEFLPQDIASALEEQTRSLQQSLSSECPSKTVSNSSTDDTSFDFERPAKLLKTTSSSCCNSDSSTITNNLSPKLSPSTSFSSFQSHILSFDNPNSSPPITTTTTQFYGFDVNPTQNEMVSVSVPQLTKSRFPDQTPKGSSKNHNFETKPSHGKRSPAHAQDHIMAERKRREKLSQSFIALAALVPGLKKMDKASVLGDAIKYVKDLKERLAVLEERSKKTREESVVILNKPDLSGDDDSSSCDESIGADSVSDTQFEVESRVSGKEMLLRIHCLKQKGLLVKLLAEIQRNNLLVINSSILPFGDSILDITIVAQMGENYNLTTKELVKNLRVSANKLGYSVHVFPEMQMIDPKAFGLCLLDKKKKEEYLNNFVEILGMVPI 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00298 415 Gene3D - 184 258 IPR036638 GO:0046983
Vimu11g00298 415 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 191 240 IPR011598 GO:0046983
Vimu11g00298 415 MobiDBLite consensus disorder prediction 162 177 - -
Vimu11g00298 415 Pfam Helix-loop-helix DNA-binding domain 195 240 IPR011598 GO:0046983
Vimu11g00298 415 CDD bHLH_AtNAI1_like 192 264 - -
Vimu11g00298 415 Coils Coil 230 257 - -
Vimu11g00298 415 SMART finulus 197 246 IPR011598 GO:0046983
Vimu11g00298 415 MobiDBLite consensus disorder prediction 51 73 - -
Vimu11g00298 415 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 196 257 IPR036638 GO:0046983
Vimu11g00298 415 PANTHER BHLH TRANSCRIPTION FACTOR 50 368 - -
Vimu11g00298 415 MobiDBLite consensus disorder prediction 178 202 - -
Vimu11g00298 415 MobiDBLite consensus disorder prediction 162 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00298 Vimu-Chr11 3004771 3006849 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00298 67 365 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 40.064 6.26e-53 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu11g00298 HLH 5.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00298 - - var:108333272 622.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g00298 11 3004771 3006849 Vimu11g00298 11 3004771 3006849 ECH
Vimu11g00298 11 3004771 3006849 Vimu7g02689 7 22638159 22640074 PCT