Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00292 ATGATTAAACAAGTGGCAGAGGAGCGTCTCAGACATTTTGAAGGCGTAGAAGCCAAAGGAAAGAAGAGGATCCAAATGCTGGGTGATAGATTCGATTGGGGTTTTGAGGGCTTGATTTTGGTCCCTAGTGATTTTCAGTACCATGGCTACAGGGATTGGCCTTGTCTCGGTGACCAGATCCAAAAATTCTACCATCCAAACCCTAACTCCATCACCACCTCTCCTCCATCCTCACCCTCTTGGATGTGGAATCCAAGGGACCAAGAAGATGACTCCTGGGAGGTCAGAGCCTTTGCAGAGGACATCATGGGCACCACCTGGCCTCCAAGGTCCTACACCTGCACTTTCTGTAGAAGGGAGTTCCGTTCAGCACAAGCCCTTGGTGGCCACATGAACGTTCACCGCCGCGACCGTGCTCGCCTCCACCAACCCTCACCCATCAACAACCACCACCACCACCACCACCACCCCATCTCCTCTCTCTCCCTCTCACACCACTCGCCCTCTTTTCTCAACCTCTCTCACTCTCCGGACCCTTTCGCAAATGGTGGGGTCTGCCTCTTGTACCCCTTCCCTAACCCTAACACTGCTCCATTCTCCCCTCTCGGCCACACCACCAGTTTCAATAATGCATGTGTTGACTCTCCCTCCTCTCTTTTCTCTGTCTCCTCTTCCCTTTCACACCCTCCAATGAGCCTCCCAACTTGCTCAAATGCCTCCTATGATTTCTCAGTGGCGCAGCCTGCCACAAGGAGGAGGACCGTTCTCTCTTCTTATTCTGGGAAAGGGGAACAAGAACCCGCAACCTCCTCCGCTCATCATGGCCAACACGAGGAGCTTGATCTAGAGCTCCGTTTGGGAAATAGATCAACATCAACGTCATGA 885 0.5266 MIKQVAEERLRHFEGVEAKGKKRIQMLGDRFDWGFEGLILVPSDFQYHGYRDWPCLGDQIQKFYHPNPNSITTSPPSSPSWMWNPRDQEDDSWEVRAFAEDIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHQPSPINNHHHHHHHPISSLSLSHHSPSFLNLSHSPDPFANGGVCLLYPFPNPNTAPFSPLGHTTSFNNACVDSPSSLFSVSSSLSHPPMSLPTCSNASYDFSVAQPATRRRTVLSSYSGKGEQEPATSSAHHGQHEELDLELRLGNRSTSTS 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00292 294 SMART c2h2final6 112 134 IPR013087 -
Vimu11g00292 294 MobiDBLite consensus disorder prediction 254 270 - -
Vimu11g00292 294 Pfam C2H2-type zinc finger 112 136 - -
Vimu11g00292 294 SUPERFAMILY beta-beta-alpha zinc fingers 109 139 IPR036236 -
Vimu11g00292 294 ProSiteProfiles Zinc finger C2H2 type domain profile. 112 139 IPR013087 -
Vimu11g00292 294 PANTHER OS07G0101800 PROTEIN 87 289 - -
Vimu11g00292 294 MobiDBLite consensus disorder prediction 254 294 - -
Vimu11g00292 294 ProSitePatterns Zinc finger C2H2 type domain signature. 114 134 IPR013087 -
Vimu11g00292 294 MobiDBLite consensus disorder prediction 271 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00292 Vimu-Chr11 2939527 2940602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00292 80 147 C2H2 Transcription Factor Family AT4G17810 67.089 2.23e-30 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00292 - - vum:124830394 441.425