Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00289 ATGGCTGGTTTGGATTTAGGAAGCGCTTCACGCTTTGTTCAAAACCTTCACAGACCGGACTTGCACTTGCAGCAACTCCATCACGATTCGGAGGACCAAGAGACGCCGCCACAGAATCGCGGAGGGGTGCCGTTCGATGACGATGACCGAAGCCAAGGATTGGAGCTAGCTTCCACGGGTCCTGGTGATGTGGTCGGTCGCCGTCCACGTGGAAGGCCACCGGGATCCAAGAACAAGCCGAAGCCGCCGGTGATAATCACGCGGGAGAGCGCCAACACTCTCCGAGCGCACATCCTCGAGGTCGGAAGCGGCTCCGACATATTCGACTGCGTCACCACCTACGCGCGCCGCCGCCAGCGCGGGATCTGCATCCTCAGCGGCAGCGGCACCGTCACCAATGTCAGCCTCCGCCAGCCGGCCGCTGCTGGCGCTGTCGTCACGCTCCACGGCCGCTTCGAGATTCTTTCCCTCTCCGGCTCCTTCCTCCCGCCGCCGGCTCCGCCTGGGGCTACCAGCCTCACTATCTATGTGGCCGGAGGGCAGGGCCAGGTGGTCGGAGGAAACGTGGTTGGAGAGCTGACAGCAGCGGGGCCGGTGATCGTCATCGCGGCGTCGTTCACGAACGTAGCCTACGAGAGGCTACCGTTAGAAGAAGAAGAAGAACAGCTTCAGATTCAGGCACCCCCTACGACGTCGTCTCACGGAGTTGGAAATAACAACGGAAACAATAGCAATAACAACTCTTTCCCGGACCCTTCTTCGGGACTTCCCTTCTTCAATTTACCTCTGAATATGCAGAACGTTCAGTTACCCGGGGAGGGTTGGGGGGGAAACGCTGCGTCACGTCCACCACCTTTTTGA 861 0.5993 MAGLDLGSASRFVQNLHRPDLHLQQLHHDSEDQETPPQNRGGVPFDDDDRSQGLELASTGPGDVVGRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVGSGSDIFDCVTTYARRRQRGICILSGSGTVTNVSLRQPAAAGAVVTLHGRFEILSLSGSFLPPPAPPGATSLTIYVAGGQGQVVGGNVVGELTAAGPVIVIAASFTNVAYERLPLEEEEEQLQIQAPPTTSSHGVGNNNGNNSNNNSFPDPSSGLPFFNLPLNMQNVQLPGEGWGGNAASRPPPF 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00289 286 ProSiteProfiles PPC domain profile profile. 91 229 IPR005175 -
Vimu11g00289 286 MobiDBLite consensus disorder prediction 224 255 - -
Vimu11g00289 286 MobiDBLite consensus disorder prediction 220 255 - -
Vimu11g00289 286 PIRSF ESCAROLA 7 285 IPR014476 GO:0003680
Vimu11g00289 286 SUPERFAMILY AF0104/ALDC/Ptd012-like 91 223 - -
Vimu11g00289 286 Pfam Plants and Prokaryotes Conserved (PCC) domain 95 208 IPR005175 -
Vimu11g00289 286 Gene3D - 94 230 - -
Vimu11g00289 286 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 33 261 IPR014476 GO:0003680
Vimu11g00289 286 FunFam AT-hook motif nuclear-localized protein 94 221 - -
Vimu11g00289 286 CDD DUF296 95 170 IPR005175 -
Vimu11g00289 286 MobiDBLite consensus disorder prediction 28 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00289 Vimu-Chr11 2883469 2884329 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00289 1 284 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 67.320 2.12e-104 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00289 - - pvu:PHAVU_003G230600g 468.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g00289 11 2883469 2884329 Vimu11g00289 11 2883469 2884329 PCT