Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00287 ATGGACGCTCGAGAACCACCCCGACCACAGCCGCCCTCCATCATGGCGGGCCCCACCTCATATGCCCCCACCAACATCGGCCCTAATTCGTCCGGTGCCGTCATGATGGCGCCCGCCACCGCGCGATTTCCCTTCGGCGTCTTGCCGCCGCCGCAACAACAGCCTCCTCCAGTGTCGGAGCCTTTCCCTGTCTCCCCCGCAGCCGCTTACGACGGCTCCTCCTCGCCGATGAAGCCATGCTCGCTCGCCAAGAAGAAGCGTGGTCGTCCCCGGAAGTACTCGCCGGATGGTAACATTGCCCTCGGCCTCGCTCCTACCCATGCTTCTCCTCCACCTTCCTCCGCCGTCGCTTCCGGCGGCGGAATAGGTGGCGAGTCGGCCGGTACTGCCTCCGCCGATGCTCCGGCGAAGAAGCACCGAGGACGTCCTCCCGGGTCTGGGAAGAAACAACTGGATGCTCTCGGAGCTGGTGGGGTTGGATTCACTCCCCACGTGATCTTGGTGGAGTCTGGCGAGGACATCACGGCAAAAATTATGTCCTTTTCTCAGCAAGGGCCTCGAACAGTTTGTATTCTCTCGGCTATTGGTGCAATCTGTAATGTTACCCTTAGACAACCTGCACTATCTGGTGGTACGGCAACATACGAGGTACTTTTATATCCATTTGGAATCTCGTTGTCCATTATATTAAACTTTATCTATGCTATGTTGGAAATGTTGGAAATGATCTGTGCATATTCTCTTTTATTTCCATTTCTTGCCGTTCCATATATCCCACAACTAAATGGCTCTGGAGGAAGTGAGATTGAGCTTGATCTTATTAGTTTCACAGTTCTACGCTCCACTATGTCTTGGGTTATAGTTAACTTTACGTCATGCCAATTTACATTGCAGGGCCGATTTGAGATTATATCATTATCAGGTGCCATGCAACAATCTGAAAGTAACGGTGAACGTAGCAGAACATGCACTTTGAATGTAACCCTTGCAGGGTCCGATGGACGTGTTTTGGGTGGCGGAGTTGCTGGAACGCTAACTGCGGCATCAACTGTACAGGTCATAGTGGGTAGCTTTATTGTGGATGGAAAGAAGTCGAACTCGAATGTCCTCAAATCTGGGCCTTCTTCTGCACCGCCACCCCAAATGCTAACATTTGGTGCACCAATGACTCCAACTAGTCCTACTTCTCAAGGGCCTTCGACTGAGTCCTCTGAGGAACATGACCACACTCCTTTTTGTAGGGGGCCTGGGTCTGGGTCTGGGCCTGGACCTGGACTCTACAACAATACTAGTCAACCCATGCATAATATGCCCATGTACCATCATCCGCTATGGGCTGGCCAAACTCATCAGTGA 1356 0.5251 MDAREPPRPQPPSIMAGPTSYAPTNIGPNSSGAVMMAPATARFPFGVLPPPQQQPPPVSEPFPVSPAAAYDGSSSPMKPCSLAKKKRGRPRKYSPDGNIALGLAPTHASPPPSSAVASGGGIGGESAGTASADAPAKKHRGRPPGSGKKQLDALGAGGVGFTPHVILVESGEDITAKIMSFSQQGPRTVCILSAIGAICNVTLRQPALSGGTATYEVLLYPFGISLSIILNFIYAMLEMLEMICAYSLLFPFLAVPYIPQLNGSGGSEIELDLISFTVLRSTMSWVIVNFTSCQFTLQGRFEIISLSGAMQQSESNGERSRTCTLNVTLAGSDGRVLGGGVAGTLTAASTVQVIVGSFIVDGKKSNSNVLKSGPSSAPPPQMLTFGAPMTPTSPTSQGPSTESSEEHDHTPFCRGPGSGSGPGPGLYNNTSQPMHNMPMYHHPLWAGQTHQ 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00287 451 SMART AT_hook_2 84 96 IPR017956 GO:0003677
Vimu11g00287 451 SMART AT_hook_2 137 149 IPR017956 GO:0003677
Vimu11g00287 451 MobiDBLite consensus disorder prediction 17 31 - -
Vimu11g00287 451 MobiDBLite consensus disorder prediction 1 150 - -
Vimu11g00287 451 CDD DUF296 162 358 IPR005175 -
Vimu11g00287 451 Pfam Plants and Prokaryotes Conserved (PCC) domain 163 358 IPR005175 -
Vimu11g00287 451 MobiDBLite consensus disorder prediction 386 401 - -
Vimu11g00287 451 Gene3D - 163 229 - -
Vimu11g00287 451 Gene3D - 273 370 - -
Vimu11g00287 451 ProSiteProfiles PPC domain profile profile. 157 379 IPR005175 -
Vimu11g00287 451 SUPERFAMILY AF0104/ALDC/Ptd012-like 294 359 - -
Vimu11g00287 451 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 53 407 IPR039605 GO:0003680
Vimu11g00287 451 MobiDBLite consensus disorder prediction 1 16 - -
Vimu11g00287 451 MobiDBLite consensus disorder prediction 366 434 - -
Vimu11g00287 451 SUPERFAMILY AF0104/ALDC/Ptd012-like 161 212 - -
Vimu11g00287 451 MobiDBLite consensus disorder prediction 44 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00287 Vimu-Chr11 2864903 2869507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00287 296 387 AT-hook Motif Nuclear Localized (AHL) Family AT5G46640 48.980 6.63e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00287 - - gmx:100789717 294.278