Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00283 ATGGCGAATGAGTTTGATCTTGATATGCCACCTACAAATGCTACTTCATCATCATCAACTAAGAGTATGGTGGAAAAAGTCAACTTGTCTGTTCTGGATGTAGAAACCTTCTCATGTATCCAGTTGGAGCCACCTCTGTGTGCTGTGCTGTTTGCAATGCAGTCACAGCAGTGCCACCTCCTGGTAGCTAAATCACAAACACTAATGCGTGACAGGCACAGAAATGGCCCAGTTAGTTTGCGGAGGTTGCCATACTCTACTCATGTACATCCGTGGAGCGACAAATGTGCAATGTTCTTGTTGTCACACGGTCAATCTAGCGTTGGAAGGTATTTTACTATCAATGTCTCTATTTTTGTGGGTAATCATCAAGTGTGTATTGAATCAGCAAATCAGGTGGCACATGTCAACTGTGGGAACTGCAGGATGCTACTCATGTACCAATATGGAGCAAGATCCGTGAAATGTGCAGCGACAACAAGCACCACTGAGCAGAAGTTCAACACTGTAACCATACAATAG 522 0.4406 MANEFDLDMPPTNATSSSSTKSMVEKVNLSVLDVETFSCIQLEPPLCAVLFAMQSQQCHLLVAKSQTLMRDRHRNGPVSLRRLPYSTHVHPWSDKCAMFLLSHGQSSVGRYFTINVSIFVGNHQVCIESANQVAHVNCGNCRMLLMYQYGARSVKCAATTSTTEQKFNTVTIQ 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00283 173 Pfam LSD1 zinc finger 138 157 IPR005735 -
Vimu11g00283 173 MobiDBLite consensus disorder prediction 1 20 - -
Vimu11g00283 173 PANTHER PROTEIN LSD1 129 165 IPR040319 -
Vimu11g00283 173 NCBIfam zinc finger domain, LSD1 subclass 135 158 IPR005735 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Vimu11g00283 zf-LSD1 2.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00283 - - cit:102618163 77.7962