Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00279 ATGGGTTGCACCATGAGGGAAAAACACATCAGGGCTAATCGGAGACCGCGATCGGCGAAACCGGACTCCGATTCTTGCGACAAAGATGCCATATCCAAATCCATAGCCGAGTCTGGTCTCAAGCCCTTTAGGTACCATACGTCTTCCAATGATTCTTCCCCAAGCCTAAATTCAAACCCTAATGTGGAGGAAACCGGGTGGGGTTACTGTACAGAGGAACAATTGGAAGAGATTCTGTTGAAAAACTTGGAGTTTATTTACAATGAAGCTGTCTCGAAGCTTGTTGCGTTGGGTTACGATGAGGATGTTGCTGTTAAGGCCATGCTTCGAAATGGGCATTGTTATGGTGGCATGGATGCGCTGACAAATATTTTGCACAATTCCTTGGCGTATTTAAATAGTAATAGTGATGGTGGTGGGAATATGGATGAGACTGAGCCTGTGTTCTCTAATTTGAGGCAGTTAGAGGAGTACTCTGTGGCCGCTTTGGTGTGTTTGGTTCAACAGGTGAGGCCGCATTTGAGCAAAGGTGATGCCATGTGGTGTTTGCTCATGAATGATCTTCATGTTGGGAGGGCTAGTGCTATGGATATTCCTGTGCCAGGCACTGGGAACCCTGCTCCGGCTTCCGGTGAGGGTGGTGGCAATTCGGTTGGTGTTATGGGGCCGGCTTTTTGTAGGTTTCACGGAGGTTGGGGATTTGCAAATGGGGGAAGCTTTGATTTTCCTGTGAATGGGGTATTCTCTTGCGGGACAGAGATGAATTTGCAGCTACAAAGAGACATTGAGTTTCCGAAGAGGTTTAATCTGTCTCCTTCAATGAAGTCTTTATTGAAAAGAAATGTTGCAATGTTTGCTGCTGGTTTTAGGGCAAACTCCAAGCAGTTGCAGGCGCAGGCAAAGACCATTTCTGGGCGGAGTACTGCACATAGTTTGGATTCTTTTGCCGCGACCGGGACAGGAGTCCCGACTGATCAATCTGGAGGAGATTCACAGAATGTCGATAACCAAGATGCTGTGAATTCGGTGCTCAGTAAATTTCGTGATTTGAATCTTGACGAGAATTTGGAGCTTGTGGCGGAAGATCAGAAGGATGAGGTCATAGTCACTTTATTTCATCAGATTAAGGATCTTGAGAAGCAGGTCAATGAGCGAAAAGACTGGGCTCATCAGAAGGCAATGCAGGCGGCTAGAAAGCTAAGTAGTGATCTAACCGAGCTCAAGATGTTGCGGATGGAAAGAGAGGAGACTCAGAAATTGAAGAAAGGGAAACCGGCCCTTGAGGACACAACCATGAAGAGGCTATCAGAGATGGAGAATGCACTGAGAAAGGCCAGTGGTCAACTGGACCTTGCGAATGCAGCTGTGAGGAGACTAGAAACTGAGAATGCAGAAATGAAAGCAGAGATGGAGGCTTCTAAGTTAAGTGCATCAGAGTCAGTGACAGCTTGCTTAGAAGTTGCTAAAAGGGAGAAAAAATGTTTAAAAAAACTTCTAGCTTGGGAAAAACAGAAAGCTAAGCTGCAGCAAGAGATTTCTGGTGAAAAACAGAAGATATCGGAGACACAAGAAATGTTGGTTCAGATTAGACAGTGTCAAAAGGAGGCTGAGAAGACAGGGACTGCTCTGTACTGCTACGTTGCTCGAGTGGTGTTATCTGAAAATCTGGAAAGTATCTTGTGGCCTGGGACAAGCAGACCCCAAACAGGGATCAGTTCACTGTCAAGGGGTTGGAGTCACCTAATGGTGAAGTGGAAGGAGGAGTTGAAGGCTAAAGAGGAAGCCTTAGCAGTGGTTGAGGAGGAACGGCGCTCTAAGGAAGCAGCTGAATCTAATAATAAGAGGAGGATTGAGGCTTTGCGTCTGAAGATAGAGATAGATTTCCAGCGTCACAAGGATGATCTACTAAGACTGGAACAGGAACTTTCGCGCCTTAAAGCCTCTGCTCAGTCTGCTGAGTTGCATCACCAATCAAGCACTTCACCCACAAGCGACTCTGAAGGCACAAAGCCCCAAAGAGAGACCATTGCTAGGCTGCTCCAACAATTAGATAACCTGGACGATTTTTCCGATAAAGAAGTGAATAGCAACAGAGAATGCATTATATGTATGAAAGATGAAGTCTCCATTGTTTTCTTGCCATGTGCACACCAAGTTATGTGTGCTAGTTGCAGTGATGAGTATGGAAGAAAAGGTAAGGCTGCTTGTCCCTGCTGCAGGGTTCAAATTCAACAGAGAATTCGTGTATTTGGGGCAAGTTCCTAG 2265 0.46 MGCTMREKHIRANRRPRSAKPDSDSCDKDAISKSIAESGLKPFRYHTSSNDSSPSLNSNPNVEETGWGYCTEEQLEEILLKNLEFIYNEAVSKLVALGYDEDVAVKAMLRNGHCYGGMDALTNILHNSLAYLNSNSDGGGNMDETEPVFSNLRQLEEYSVAALVCLVQQVRPHLSKGDAMWCLLMNDLHVGRASAMDIPVPGTGNPAPASGEGGGNSVGVMGPAFCRFHGGWGFANGGSFDFPVNGVFSCGTEMNLQLQRDIEFPKRFNLSPSMKSLLKRNVAMFAAGFRANSKQLQAQAKTISGRSTAHSLDSFAATGTGVPTDQSGGDSQNVDNQDAVNSVLSKFRDLNLDENLELVAEDQKDEVIVTLFHQIKDLEKQVNERKDWAHQKAMQAARKLSSDLTELKMLRMEREETQKLKKGKPALEDTTMKRLSEMENALRKASGQLDLANAAVRRLETENAEMKAEMEASKLSASESVTACLEVAKREKKCLKKLLAWEKQKAKLQQEISGEKQKISETQEMLVQIRQCQKEAEKTGTALYCYVARVVLSENLESILWPGTSRPQTGISSLSRGWSHLMVKWKEELKAKEEALAVVEEERRSKEAAESNNKRRIEALRLKIEIDFQRHKDDLLRLEQELSRLKASAQSAELHHQSSTSPTSDSEGTKPQRETIARLLQQLDNLDDFSDKEVNSNRECIICMKDEVSIVFLPCAHQVMCASCSDEYGRKGKAACPCCRVQIQQRIRVFGASS 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00279 754 MobiDBLite consensus disorder prediction 649 671 - -
Vimu11g00279 754 PANTHER OS05G0141500 PROTEIN 1 538 IPR046934 -
Vimu11g00279 754 MobiDBLite consensus disorder prediction 1 29 - -
Vimu11g00279 754 Pfam Family of unknown function (DUF6592) 82 196 IPR046527 -
Vimu11g00279 754 Coils Coil 628 655 - -
Vimu11g00279 754 CDD RING-HC_MIP1-like 695 749 - -
Vimu11g00279 754 ProSiteProfiles Zinc finger RING-type profile. 700 740 IPR001841 -
Vimu11g00279 754 Coils Coil 582 612 - -
Vimu11g00279 754 SUPERFAMILY RING/U-box 681 746 - -
Vimu11g00279 754 MobiDBLite consensus disorder prediction 315 335 - -
Vimu11g00279 754 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 687 751 IPR013083 -
Vimu11g00279 754 Coils Coil 435 476 - -
Vimu11g00279 754 Coils Coil 491 525 - -
Vimu11g00279 754 SMART ring_2 700 739 IPR001841 -
Vimu11g00279 754 Pfam Zinc finger, C3HC4 type (RING finger) 697 745 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00279 Vimu-Chr11 2794156 2799857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00279 686 750 C3H Transcription Factor Family AT1G73950 36.232 8.33e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00279 - - gmx:100777787 1188.71