Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00277 ATGGGAGGGGCAACACTGCCACCAGGATTTCGTTTCCATCCAACTGATGAGGAACTAGTGGGATACTACCTTAAAAGAAAAGTAGAGGGGCTTGAAATTGAGCTTGAAGTTATCCCTGTGATCGATTTTTACAAATTCGATCCCTGGGAGTTGCCGGAGAAGTCTTTCCTTCCAAAACGGGATATGGAATGGTTTTTCTTTTGTCCACGGGATCGCAAGTACCCAAATGGATCAAGAACAAATAGAGCTACCAAAGCTGGGTATTGGAAAGCCACCGGAAAAGACAGAAAGGTGGTGTGCCAGTCTGATCCATCCAATGTTACTGGGTACCGCAAGACCTTGGTTTTCTATGCTGGGAGGGCCCCTTTAGGAGATAGAACTGATTGGGTCATGCATGAGTATCGCCTCTGTGATGATCTTGGCCAACCCACACCTTCTTTCCAGGGTGGTTTTGCCTTGTGCCGGGTTATTAAGAAGAATGAGAAAGCAAGTGCTTCGAAGGGAGAAAACAAGGGCAAAAGGGCTGGAAGCAGTTCCATTAATGGGAGTGACACCTCAGTGAGATTCTCTGGTGAGCCATTCAGCAACTCTGGTGATTCTTCCTCTCATGCAAGCCAACAACTGAATAATGAGAGTCGTTATTCAAGCCCAATTACTTCTCCATACAATGTGGCTCCAATGGGAGAGATTAACCAAGCTTCTCTGGAAACCAATCCTTCAAACTTCTGGATCTCCCCGGACATGATTCTTGATTCTTCAAAGGACTACCCTCAATTACAGCATGCTGTATCTGAATATTTTCCACGGTATGACTTACCAAGTATGGGGACACAATGGCAATCAGTGGAACATTCAGAAACTCCATCTAGTTTCTCCTACTCAAATGTCAATGGAGAAGTTGAATTTGCTGATACTCTCAGTCAAATTGGTGGCATGTCACCTTACTCAAGAGAATGGAATTCCATGGACTTCTATGGAAATGGAGATGTCCCTTATGAAGATTATGATCAAATTAACTCCATCTCATATCCATGA 1035 0.4425 MGGATLPPGFRFHPTDEELVGYYLKRKVEGLEIELEVIPVIDFYKFDPWELPEKSFLPKRDMEWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDRKVVCQSDPSNVTGYRKTLVFYAGRAPLGDRTDWVMHEYRLCDDLGQPTPSFQGGFALCRVIKKNEKASASKGENKGKRAGSSSINGSDTSVRFSGEPFSNSGDSSSHASQQLNNESRYSSPITSPYNVAPMGEINQASLETNPSNFWISPDMILDSSKDYPQLQHAVSEYFPRYDLPSMGTQWQSVEHSETPSSFSYSNVNGEVEFADTLSQIGGMSPYSREWNSMDFYGNGDVPYEDYDQINSISYP 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00277 344 MobiDBLite consensus disorder prediction 171 220 - -
Vimu11g00277 344 SUPERFAMILY NAC domain 4 159 IPR036093 GO:0003677|GO:0006355
Vimu11g00277 344 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 219 - -
Vimu11g00277 344 Gene3D NAC domain 15 164 IPR036093 GO:0003677|GO:0006355
Vimu11g00277 344 MobiDBLite consensus disorder prediction 162 220 - -
Vimu11g00277 344 FunFam Nac domain-containing protein 86 15 162 - -
Vimu11g00277 344 Pfam No apical meristem (NAM) protein 7 136 IPR003441 GO:0003677|GO:0006355
Vimu11g00277 344 ProSiteProfiles NAC domain profile. 6 159 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00277 Vimu-Chr11 2784010 2785727 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00277 1 301 NAC Transcription Factor Family AT4G17980 55.082 1.98e-110 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu11g00277 NAM 1.9e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00277 - - gmx:100792714 625.935