Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00272 ATGGGAAGTGGAGTTTCAACCCTCTGTTGGTGCTACGGGAGGAACCAACCGGCCGACCAGGATGTTCTATTCAAGGCCACCGACCCATTAGACGAAACCCTAGGACACTCTTTCTGTTACGTCAGATCCTCCGCTCGCTTCCTCTCACCTACTCACTCTGATCGCTTCCTCAGCCCCTCCACCTCCCTCCGCTTCTCCCCCACTCATGACCCCCGAACCCGACCCGAATCCCATGAAACCGGCTTCAAAGCCATTTCCGGAGCCTCCGTTAGCGCCAACAGCTCTCTCCCCACTACAGTCATTCACTTTGACGAAGACACCCTCGATTGCGTCGGAGCTAACACCAAGGGCAATATCGTCAGTGGCTTCGAAAGCACGGCGTCGTTTAGCGCGCTCCCGCTCCAGCCCGTTCCCCGAGGCGGCGAGCCCTTCCAGGTCAGCGGCTTCTTCCTCTCCGGTCCAATAGAAGCCAACGCCGTCTCAGGTCCTCTACCCGCCTCTGAAGGCGGCGGCGAGGTTCCCTTCTCTGCGCCGCTCAGCGGGCTCTACGGAAAGAAAAGCAGGAAGAAGAAGGTGATTTCGGGATTCCGGAAGGCGTTCAATCGGAACGCCACGGAGATGAAGAGGCCGTGGGTGGTGCCGGTGCCGGAGAAGAAGGAGGCGGCGGCGGCGGAGGCGAAGGGCGGTGAGGACAATGTGCAGTGGGCGTTGGGAAAGGCTGGGGAGGATCGCGTCCACGTGGTGGTGTCGGAGGAGCAAGGGTGGTTGTATGTTGGGATTTACGACGGTTTCAATGGCCCAGACGCGCCGGAGTTTCTGATGGGGCACCTCTACCGTGCCGTTCACAGCGAGCTACAAGGCTTGTTCTGGGAGCTGGAAGACGAACAACCGTTGCCGCAAGAGAGTAATCCCGTGGTGGAAGGAACGCAGAGTAAACGGCGTAAACTGTGGGAGCTTCTTGCTGAGGACGGACTGGACCTTTCTGGTTCGGATAGGTTTGCGTTTTCCGTGGACGATGCGTTGAGCGTTAACAACGCCAATGCGGGGTCTGCTGTGAGTAGGAGGTGGCTGTTGCTGTCGAAGTTGAAGCAGGGACTATCGAAGCAGAAGGAGGGTGAAAGGAGGGGGTGGAATTTGGGTAATGAGGAGAAGGAAAAGGAGAAGCCCTCTGGGAGGAAGCGGAAGGTGGGTCCTGTGGATCATGGACTTGTTTTGAGTGCGTTGTCTCGGGCACTTCAAGTCTCGGAGGTTGCGTATTTGGATATGACGGATAAGCTTCTGGATACGAATCCGGAGCTTGCTTTGATGGGTTCGTGTTTGTTGGTTGTGTTGATGAGGGATGAGGATGTGTATGTGATGAATGTTGGGGATAGTAGGGCTATTGTTGCACACTACGAAACAAAGGATGTGGATTCTACTGTTGAATCGGGAAGCAAGGGAGGTGTTGAGTCCGGTGCTGAGAGCATAGTTGAGGAGTCATTGGGTTTGGGTCAAAGTGAAAATGCTCAACAAATGAGGTTGGCGGCGTTGCAACTCTCTACTGACCACAGCACCAGCATTGAAGAAGAGATCATTAGGATTAAAAACGAGCATCCTGATGATACCCAATGTATAGTCAATGGCAGAGTCAAAGGTCGCCTGAAGGTCACCAGAGCATTCGGCGCTGGATTTTTGAAACAGCCGAAGTTGAATGATGCGGTACTAGAGATGTTTCGAAATGAATATATTGGCACTGCTCCGTATATTTCCTGCTCTCCCTCACTACGTCACCACAGATTATGCCAGAGAGATCAGTTCCTGATCCTTTCATCTGATGGTTTATATCAATATCTAAACAATGAAGAAGTGGTTTCTCATGTTGAGAGCTTCATGGAAAAATTTCCTGAAGGAGATCCAGCCCAACATTTAATAGAAGAGGTGCTTCTCCGTGCAGCTAAGAAAGCTGGAATGGATTTTCATGAATTGCTTGATATACCACAAGGAGATCGGAGGAAGTATCACGATGATGTTACTGTCATGGTAATATCACTTGAAGGGAGAATCTGGAAATCGTCAGGAAAATATCCGTGA 2070 0.5242 MGSGVSTLCWCYGRNQPADQDVLFKATDPLDETLGHSFCYVRSSARFLSPTHSDRFLSPSTSLRFSPTHDPRTRPESHETGFKAISGASVSANSSLPTTVIHFDEDTLDCVGANTKGNIVSGFESTASFSALPLQPVPRGGEPFQVSGFFLSGPIEANAVSGPLPASEGGGEVPFSAPLSGLYGKKSRKKKVISGFRKAFNRNATEMKRPWVVPVPEKKEAAAAEAKGGEDNVQWALGKAGEDRVHVVVSEEQGWLYVGIYDGFNGPDAPEFLMGHLYRAVHSELQGLFWELEDEQPLPQESNPVVEGTQSKRRKLWELLAEDGLDLSGSDRFAFSVDDALSVNNANAGSAVSRRWLLLSKLKQGLSKQKEGERRGWNLGNEEKEKEKPSGRKRKVGPVDHGLVLSALSRALQVSEVAYLDMTDKLLDTNPELALMGSCLLVVLMRDEDVYVMNVGDSRAIVAHYETKDVDSTVESGSKGGVESGAESIVEESLGLGQSENAQQMRLAALQLSTDHSTSIEEEIIRIKNEHPDDTQCIVNGRVKGRLKVTRAFGAGFLKQPKLNDAVLEMFRNEYIGTAPYISCSPSLRHHRLCQRDQFLILSSDGLYQYLNNEEVVSHVESFMEKFPEGDPAQHLIEEVLLRAAKKAGMDFHELLDIPQGDRRKYHDDVTVMVISLEGRIWKSSGKYP 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00272 689 Gene3D - 215 684 IPR036457 -
Vimu11g00272 689 SMART PP2C_4 226 675 IPR001932 -
Vimu11g00272 689 Pfam Protein phosphatase 2C 510 646 IPR001932 -
Vimu11g00272 689 ProSiteProfiles PPM-type phosphatase domain profile. 220 677 IPR001932 -
Vimu11g00272 689 CDD PP2Cc 400 677 IPR001932 -
Vimu11g00272 689 MobiDBLite consensus disorder prediction 59 79 - -
Vimu11g00272 689 PANTHER PROTEIN PHOSPHATASE 2C 218 676 IPR015655 GO:0004722|GO:0006470
Vimu11g00272 689 SUPERFAMILY PP2C-like 239 678 IPR036457 -
Vimu11g00272 689 MobiDBLite consensus disorder prediction 370 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00272 Vimu-Chr11 2752013 2756318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00272 1 688 PP2C-type Phosphatase Gene Family AT2G35350 54.969 0.0 747
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00272 - - gmx:100781535 1147.11