Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00269 ATGGGTTGCCTACACTCCAAAACCGCTCATCTTCACTCTCCCGAAGACCCTCCCACTGCCTTGCCAGACTCAAAAAAACCCGATCCAGGGAATGGTGGGGATGATGTTGATCAAGACGTTCAGGTTCCAGCATTCAAAGAGTACGGTCTGAGTGAACTTCGAAGGGCCACAAATGAGTTCAACACAGATTACATTGTTTCTGAGAGTGGGGAGAAAGCCCCCAATGTGGTCTACAGAGGGAAGCTAGAGAACAATCGTTTAGTTGCTGTGAAGCGGTTCTCAAAACTGTCTTGGCCTGATGCTCAACAGTTTATGCCCTCGGTATGGTTGCCGATTGAGGAAGAAAGGACAGTATTTAGTTGTGTTTTCAAACGCACTGCTAATTTTTGTGGATTCTCTTGTGCATTTCTGGGGTTTGACCAGGCAGCTGGAGTTGGGAAAGTGAGGCACAAGAGACTGGTGAATCTAATTGGCTGTTGTGCTGAAGGAGATGAAAGGCTCTTGGTAGCTGAGTACATGCCAAATGACACTTTGTCCAAACATCTCTTTCATTGGGACAAGCAACCATTACCATGGGAAATGCGTGTAAGAGTTGCGTACCATGTTGCGCAGGCACTAGATCATTGCAGCATGGAAAACCGGAAAATATATCATGATCTGAATGCATATAGGATTCTTTTTGATGAGGATGGTGATCCCCGCTTGTCTAGTTTTGGGCTTATGAAAAATAGTCGAGACGGGAAAAGCTACAGTACCAATTTAGCTTACACTCCACCTGAATTTTTGAGAACAGGCAGGATAATCCCGGAGAGTGTGGTCTACAGTTATGGAACTGTTCTTCTGGATCTTTTAAGTGGCAAGCATATTCCCCCTAGCCATGCTTTGGACCTGATTAGAGGGAAGAATGTTTTGTTGTTGATGGACTCTTCCCTGGAAGGGCAATATGCGAATGATGATGCTACAAAGTTGGTTGAGCTTGCTTCAAAGTGTCTTCAGTTTGAGGCCAGAGAACGACCTGAAATTAAGTTTCTTCTTACTTCCGTTACACCTCTGCAGAAGCAAAAAGAGGTTTCCCTTCTCTTGCTTGTAAAGTATTTGTTCATCATGTTGAATCACCCTCCTCCTTTTTACAGAATGGATCTCACTGCTGTGCATGATATATTGTTAAAAACAGGTTATAAAGATGAAGAAGGAGCAGAAAATGAGCTTTCATTCCAAGAATGGACACAGCAAGTGCAAGATATATTGAACACTAAAAAGTTTGGGGATATTGCATTCAGGGACAAGGATTTCAAAAATGCTATTGAGTACTATTCTAAGTTGGTGGTTATGATGTCTGTTCCTTCTGCTACTGTGTTTGCAAGGAGAGCCTTCTCCTACTTGATGAATGATCAAGCAGAACTTGCATTAAGGGATGCCATGCAGGCACAGGCTCTGGCTCTCTCAAAGCTGGGAATGGAAACTGATGCACATGACATGCTCAATGATGGGGCTGCTTTTGAAGCAAAGAGGACTAACAGCTGGCGTGGTTAA 1533 0.4384 MGCLHSKTAHLHSPEDPPTALPDSKKPDPGNGGDDVDQDVQVPAFKEYGLSELRRATNEFNTDYIVSESGEKAPNVVYRGKLENNRLVAVKRFSKLSWPDAQQFMPSVWLPIEEERTVFSCVFKRTANFCGFSCAFLGFDQAAGVGKVRHKRLVNLIGCCAEGDERLLVAEYMPNDTLSKHLFHWDKQPLPWEMRVRVAYHVAQALDHCSMENRKIYHDLNAYRILFDEDGDPRLSSFGLMKNSRDGKSYSTNLAYTPPEFLRTGRIIPESVVYSYGTVLLDLLSGKHIPPSHALDLIRGKNVLLLMDSSLEGQYANDDATKLVELASKCLQFEARERPEIKFLLTSVTPLQKQKEVSLLLLVKYLFIMLNHPPPFYRMDLTAVHDILLKTGYKDEEGAENELSFQEWTQQVQDILNTKKFGDIAFRDKDFKNAIEYYSKLVVMMSVPSATVFARRAFSYLMNDQAELALRDAMQAQALALSKLGMETDAHDMLNDGAAFEAKRTNSWRG 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00269 510 Gene3D Transferase(Phosphotransferase) domain 1 174 363 - -
Vimu11g00269 510 MobiDBLite consensus disorder prediction 1 38 - -
Vimu11g00269 510 ProSiteProfiles Protein kinase domain profile. 63 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00269 510 FunFam probable serine/threonine-protein kinase At5g41260 174 365 - -
Vimu11g00269 510 SUPERFAMILY Protein kinase-like (PK-like) 52 354 IPR011009 -
Vimu11g00269 510 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 139 505 IPR045845 GO:0004672|GO:0009742
Vimu11g00269 510 Pfam Protein tyrosine and serine/threonine kinase 145 345 IPR001245 GO:0004672|GO:0006468
Vimu11g00269 510 SUPERFAMILY TPR-like 414 496 IPR011990 GO:0005515
Vimu11g00269 510 Gene3D Phosphorylase Kinase; domain 1 35 172 - -
Vimu11g00269 510 Gene3D Tetratricopeptide repeat domain 399 504 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00269 Vimu-Chr11 2721423 2726123 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00269 14 348 Glycoside Hydrolase AT3G07070 30.641 2.86e-35 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Vimu11g00269 PK_Tyr_Ser-Thr 3.4e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00269 K14500 - gmx:100793576 833.943