Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00263 GTCTCATGCCAGTGTTCTGCATTTTCTGTTGGCTATTTAGAAGCTGTTTACCATTTGAACAAAATTGAACTGAGAAACGATGCCAAGCCAGCTATGGTTTTCACTGCCAATGATTTACAAGAATGGAAAGATTTTCCCAAAGGACTCAAGGTTCTTCTTCTTGAGGGAGACAGCATTTCTGCTGCCGAGATAAGGGCAAAGCTTGAAGCCATGGACTATAATGTTTCTACATTCTGCGATGAGAATGAAGCCTTGTCAGCAATCTCAAGTAGACCTGAAAGCTTCCACATTGCCATAGTAGAGGTGAGTTCGAGCAGTAGCCAGGGAGGTTTCAAATTTCTTGAGAATGCCAAGGACTTGCCAACAATTATGATATTTCCAATTTCTCATGTAGTGACTTCTAACAACCATTGCCTGAACACCATGATGAAGTGCATAGCGCTTGGTGCAGTTGAGTTCCTCAGCAAACCACTCTCTGAGGACAAGCTCAGAAATATCTGGCAGCATGTGGTTCACAAGGCATTCAGTTCTGGGACAAGTATCCTGTGTGAATCACTTAAACCTGTCAAGGAATCTCTAGTGACTATGTTGCAGCTCCCAACAGACAATGAACAACATAAAAGTAGAGTATCCATTGATATAGAGAAAGTATCCAACTTTACTGATAATGATGATGTACTGTCTCCTGGAAATGATAAATATCCAGCTCCTTCAACCCCACAATTGATGCATGGGACAAGATTGTTAGACGATGGTGATTGCCAAGAGCAGACTAATTGCTCCACAGAAAAAGAAAGTGGGGAACATGATGGAGAATCTAAATCTGTCGAAACTACATGTGGAAATTTGAATGCTGAAACTGAAAGTACTCCTCAAGAAAGGAAATCTGATATGACTTTACATAGGGAGGAAGTGAATTTAGTTGACGCTTCCAAGGTTGAGAGTGTTGCCTCTCTACATACACAAAAAAGAAAGGTTGTAAGCAACCCTGACAAAAATACAAAATCTGCAAATAAACTAGGCGTTCTTAGTGATTCTTGTGAGATAAAGCCAAGTCGAAAGAAGATGAAAGTAGACTGGACGCCTGAGCTGCACAAAAAATTTGTGAAGGCAGTTGAGCAACTAAGCATTGATCAAGCCATTCCTTCAAGAATATTAGAATTAATGAAAGTGGAGGGCTTGACAAGGCATAATGTGGCAAGCCATCTTCAGAAGTACAGAATGCATAGGAGACAGATCTTTCCCAAGGAAGAAGATCGGAAATGGTTGAATCAAAGAGAAAGGAGCTATTGTGTTCAAAGACCAATTATGGCCTTTCCTCCATATCATTCTAATCGCACCCATCCTATGGCTCCTATATATCCTATGTGGGGACAACCTAGCACTCAAACGGCTGGCATGCATATTTGGAGCACTCCTGGTTATCCCTTGTGGCAGCCTACTGCTGAACATTGGCACTGGAAACCGTTTCCAGGGATGCATGCAGATGCATGGGGCTGTCCAGTGTTACCAGTACCACCTCCTCAAGCTCCTTTTCCCTGCTCTAAGAATATGCCTGCATTGCTCAATGCCGATGCAACAGGTCACACGTTTACCATGCCACAAAGTTCCTTAGAGCATTATCCGGCAGAGGAGGTTGTTGACAAGGTTGTGAAAGAGGCAGTAAGCAAACCATGGCTACCCTTGCCTTTGGGCCTGAAAGCCCCTTCCACAGACAGTGTGTTGGCTGAGTTATCAAGACAAGGAATTTGCAGCATCCCTCCTAGAAGCAGCAAGGGTTCAAATTGA 1788 0.4306 VSCQCSAFSVGYLEAVYHLNKIELRNDAKPAMVFTANDLQEWKDFPKGLKVLLLEGDSISAAEIRAKLEAMDYNVSTFCDENEALSAISSRPESFHIAIVEVSSSSSQGGFKFLENAKDLPTIMIFPISHVVTSNNHCLNTMMKCIALGAVEFLSKPLSEDKLRNIWQHVVHKAFSSGTSILCESLKPVKESLVTMLQLPTDNEQHKSRVSIDIEKVSNFTDNDDVLSPGNDKYPAPSTPQLMHGTRLLDDGDCQEQTNCSTEKESGEHDGESKSVETTCGNLNAETESTPQERKSDMTLHREEVNLVDASKVESVASLHTQKRKVVSNPDKNTKSANKLGVLSDSCEIKPSRKKMKVDWTPELHKKFVKAVEQLSIDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRQIFPKEEDRKWLNQRERSYCVQRPIMAFPPYHSNRTHPMAPIYPMWGQPSTQTAGMHIWSTPGYPLWQPTAEHWHWKPFPGMHADAWGCPVLPVPPPQAPFPCSKNMPALLNADATGHTFTMPQSSLEHYPAEEVVDKVVKEAVSKPWLPLPLGLKAPSTDSVLAELSRQGICSIPPRSSKGSN 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00263 595 FunFam Two-component response regulator-like APRR2 48 182 - -
Vimu11g00263 595 SUPERFAMILY CheY-like 47 173 IPR011006 -
Vimu11g00263 595 MobiDBLite consensus disorder prediction 221 299 - -
Vimu11g00263 595 NCBIfam myb-like DNA-binding domain, SHAQKYF class 355 409 IPR006447 GO:0003677
Vimu11g00263 595 Gene3D - 49 178 - -
Vimu11g00263 595 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 352 411 IPR017930 -
Vimu11g00263 595 Pfam Myb-like DNA-binding domain 358 407 IPR001005 -
Vimu11g00263 595 FunFam Two-component response regulator 351 413 - -
Vimu11g00263 595 Gene3D - 352 413 - -
Vimu11g00263 595 SUPERFAMILY Homeodomain-like 353 412 IPR009057 -
Vimu11g00263 595 ProSiteProfiles Response regulatory domain profile. 50 171 IPR001789 GO:0000160
Vimu11g00263 595 PANTHER TRANSCRIPTION ACTIVATOR GLK1 32 589 IPR044825 GO:0003700|GO:0045893
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00263 Vimu-Chr11 2624128 2629069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00263 32 590 Response Regulator Gene Family AT4G18020 49.486 8.20e-144 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vimu11g00263 Myb_DNA-binding 7.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00263 - - gmx:100777535 948.732