Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00253 ATGCAAACTCTGGCAGATACTTCCTTTATTCAATCTCGTGCAGCATATTATCCAAACTCTGAAGAAAAGGGCACAGACGTTGGTGCATGTGGATTTGGTTCCTTTGGTGCCACCGTTAATGGTGGGGATGTATCAGCTGCTTCTGATCTTTATCGAAATGGTGTTGGCTGTGGTGCCTGTTACCAGGTGAGATGTAGCAATAGTGCTTATTGCTCAGGCAATGGTGTGACGATAGTAATAACTGACCAAGGCTCAAGTGCTAACACTGACTTCATTCTTAGCCAAAGAGCTTTTGGTGGGATGGCTATCAACAAGGATGCAGCTGCTTCTCTATTAGCTCTTGGCATAGTTGATATTGAATATAGACGGGTTTCATGCAGCTACCCAGGCAAAAACATTACAGTTAAGATACATCAGAGTAGCAACAACCCTCACTATTTGGCTTTTGTCTTATGGTTTCAACAAGGAAGTAAAGACATAACTGCTGTGCAACTTTGCGAGACTGAGAACTTTGTGTGCAAGCTACTGGATCGGAGTCATGGGGCAGTATGGACCACCACCGCGCCACCTAGTGGACCATTGGGTTTGAGGATGTTGTTTAGTGATGAAGAAGGGGAAGACGAATCATGGGTCGTTCCGGTTAATAACATTCCACAAGACTGGAAGGCTGAAGAAACGTACGACTTAGGGGTACAAGTGAACCAATAG 708 0.4477 MQTLADTSFIQSRAAYYPNSEEKGTDVGACGFGSFGATVNGGDVSAASDLYRNGVGCGACYQVRCSNSAYCSGNGVTIVITDQGSSANTDFILSQRAFGGMAINKDAAASLLALGIVDIEYRRVSCSYPGKNITVKIHQSSNNPHYLAFVLWFQQGSKDITAVQLCETENFVCKLLDRSHGAVWTTTAPPSGPLGLRMLFSDEEGEDESWVVPVNNIPQDWKAEETYDLGVQVNQ 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00253 235 SUPERFAMILY PHL pollen allergen 131 228 IPR036749 -
Vimu11g00253 235 Gene3D - 128 233 IPR036749 -
Vimu11g00253 235 PANTHER EXPANSIN-B3 11 232 - -
Vimu11g00253 235 Pfam Lytic transglycolase 48 121 IPR009009 -
Vimu11g00253 235 PRINTS Expansin/Lol pI family signature 26 44 IPR007118 GO:0005576
Vimu11g00253 235 PRINTS Expansin/Lol pI family signature 215 229 IPR007118 GO:0005576
Vimu11g00253 235 PRINTS Expansin/Lol pI family signature 114 130 IPR007118 GO:0005576
Vimu11g00253 235 CDD DPBB_EXLB_N 10 126 - -
Vimu11g00253 235 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 27 131 IPR007112 -
Vimu11g00253 235 Gene3D - 1 127 IPR036908 -
Vimu11g00253 235 SUPERFAMILY Barwin-like endoglucanases 6 130 IPR036908 -
Vimu11g00253 235 Pfam Expansin C-terminal domain 133 203 IPR007117 -
Vimu11g00253 235 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 145 229 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00253 Vimu-Chr11 2509063 2510588 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00253 9 228 Expansin Gene Family AT4G17030 43.439 2.24e-57 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00253 - - gmx:100812555 427.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g00253 11 2509063 2510588 Vimu11g00253 11 2509063 2510588 PCT