Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00233 AAGATGAAGTGTTTCTTCTTCAAAGACAAGTGTAAATCCGCCCCCGAATTGCATAAGAAGAAAAACCCCGCCGTGACCCGCGCCGCCAACTCCACCGGCTCCCTATCGTCGCCCAAGAGCGTGAAGGACTTGTACAGAGAGAAAGAGCACAGCTTCAGAGTTTTCAATTTTCAGGAGCTCAGAGATGCCACCCAAGGTTTCGATAGGACGCTCAAGCTTGGAGAAGGGGGGTTCGGGAGTGTGTATAAAGGATCCATCAGACCCTCCGATGGGCAGGGTGATCCTTTTCCGGTAGCTATCAAAAGGCTCAACACGCGTGGCTTCCAGGGTCATAAAGAATGGCTTGCTGAAGTTCAATTTCTTGGCATTGTTAATCACCCAAATTTGGTTAAGCTTTTGGGATACTGCTCCCTGGACGGAGAAAGAGGAATCCAACGGCTGCTGGTGTACGAGTTCATGCCCAACGGGAGCTTGGAGGATCACCTCTTCAATAAAAGTTTACCACCTCTCCCTTGGAAAACAAGATTGGAGATCATGCTTGGTGCCGCTCAAGGATTAGCTTATCTCCATGAAGGACTGGAAATTCAGGTGATCTACCGAGACTTCAAATCTTCAAATGTTCTATTGGATGAGGAATTCCATCCAAAGCTCTCAGATTTTGGTCTTGCCAGAGAAGGACCACAAGGCGATCAGACTCATGTATCAACTGCGGTGGTTGGGACACAGGGGTATGCTGCACCAGAGTACATTGAAACGGGTCATCTGAAAGTTCAGAGCGACATGTGGAGTTTTGGTGTAGTGCTGTATGAGATCCTCACAGGAAGAAGATCATTGGAAAGAAACCGTCCCACTGCAGAACAAAAGCTTCTAGATTGGGTGAAACAGTATCCTGCCGACACCAGCAGGTTCGTGGTGATAATGGATCCTCGTCTCAGGAACCAGTATTCTCCCCAAGCAGCTCGGAAAATAGCCAAGTTGGCTGATAGCTGCTTGAAGAAGAATCCAGAAGATAGACCATCCATGAGTCAGATAGTGGAAGCCTTGAAGCAAGCCTTGCAACATTCTGAAATTCCAAACTCTTCTCAAGACATTGGTGAATCCTCCTCATCCCGGTCTAAACTGGTCAGAAAAAGTAAATAG 1140 0.4763 KMKCFFFKDKCKSAPELHKKKNPAVTRAANSTGSLSSPKSVKDLYREKEHSFRVFNFQELRDATQGFDRTLKLGEGGFGSVYKGSIRPSDGQGDPFPVAIKRLNTRGFQGHKEWLAEVQFLGIVNHPNLVKLLGYCSLDGERGIQRLLVYEFMPNGSLEDHLFNKSLPPLPWKTRLEIMLGAAQGLAYLHEGLEIQVIYRDFKSSNVLLDEEFHPKLSDFGLAREGPQGDQTHVSTAVVGTQGYAAPEYIETGHLKVQSDMWSFGVVLYEILTGRRSLERNRPTAEQKLLDWVKQYPADTSRFVVIMDPRLRNQYSPQAARKIAKLADSCLKKNPEDRPSMSQIVEALKQALQHSEIPNSSQDIGESSSSRSKLVRKSK 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00233 379 MobiDBLite consensus disorder prediction 355 371 - -
Vimu11g00233 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Vimu11g00233 379 Pfam Protein tyrosine and serine/threonine kinase 72 348 IPR001245 GO:0004672|GO:0006468
Vimu11g00233 379 PANTHER OS01G0588500 PROTEIN-RELATED 37 352 - -
Vimu11g00233 379 MobiDBLite consensus disorder prediction 18 40 - -
Vimu11g00233 379 SUPERFAMILY Protein kinase-like (PK-like) 49 348 IPR011009 -
Vimu11g00233 379 MobiDBLite consensus disorder prediction 25 39 - -
Vimu11g00233 379 ProSiteProfiles Protein kinase domain profile. 67 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00233 379 Gene3D Phosphorylase Kinase; domain 1 47 152 - -
Vimu11g00233 379 CDD STKc_IRAK 73 350 - -
Vimu11g00233 379 MobiDBLite consensus disorder prediction 355 379 - -
Vimu11g00233 379 Gene3D Transferase(Phosphotransferase) domain 1 153 373 - -
Vimu11g00233 379 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 153 362 - -
Vimu11g00233 379 ProSitePatterns Protein kinases ATP-binding region signature. 73 101 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00233 Vimu-Chr11 2257578 2259767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00233 4 348 Glycoside Hydrolase AT3G07070 43.697 2.06e-93 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vimu11g00233 PK_Tyr_Ser-Thr 1.5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00233 - - gmx:100305403 662.529