Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00222 ATGGAGGAGCGGTATGAGCCATTGAAGGAGCTTGGTTCTGGGAATTTTGGTGTGGCCAGGTTGGCAAAAGACAAGAAGACTGGAGAGCTTGTTGCCGTCAAATACATAGAGAGGGGTAAAAAGGTAAACCTCTTTTTGCCAAATTGTTTCACTTGCACTGAAATTCCATTGACTACTACTGATTTCCATGAAAGACTTATTCAGCATCATCTCGAGGAAAATTGGAGAATCGATATGCTGCAAGGCATAGAGTCTCCAAAGTTCACTATTTATTCCCTTTTTTGGTACCAGATTGATGAGAATGTTCAGAGGGAGATAATTAACCACCGATCTTTAAGGCATCCAAATATAATCAGGTTCAAAGAGGTCTTGCTCACCCCGACACATTTAGCTATTGTCTTGGAGTATGCTTCAGGTGGTGAACTTTTTGAGAGGATATGTAGTGCTGGTCGATTTAGCGAAGATGAGGCTAGATATTTCTTCCAGCAGCTAATATCCGGTGTTAGCTACTGTCATTCAATGGAAATTTGTCATAGAGATCTGAAATTGGAAAACACTCTCCTGGATGGAAAACCATCTCCTCGACTTAAAATTTGTGACTTTGGTTACTCCAAGTCTGCTCTACTGCACTCTCAACCTAAATCAACAGTTGGAACTCCTGCATACATTGCTCCAGAGGTTCTGTCACGAAAGGAGTATGATGGGAAGATTTCAGATGTTTGGTCCTGTGGTGTGACTCTTTATGTCATGTTGGTTGGTGCATACCCATTTGAAGATCCAGAAGATCCCAGAAATTTCAGAAAGACTATCGGGAGAATAATTGGTGTTCAGTACTCCATACCCGACTATGTTCGTGTTTCTTCTGAGTGTAGGAATCTTCTCTCTAGCATCTTTGTTGCTGATCCTGCCAAGAGGATCACCATTCCAGAGATAAAACAGAATCCTTGGTTTCTGAAGAATTTGCCCAAAGAGATCATCGAAGCTGAAAGAAAAGGATTTGAGGAAACAGAGAAAGATCAACCAAGCCAAAAGGTGGAAGAAATCATGAAAATCATACAAGAAGCAAGGGTACCAGGACAAGGATCCAAAGCTGGTGATGGTATGGGTGGACAAGGTGCTACTGGATCATTAGATATTGAGGATGTGGAGGAAATCGATGTTAGTGGTGACTATGAACATGTGTGA 1185 0.4169 MEERYEPLKELGSGNFGVARLAKDKKTGELVAVKYIERGKKVNLFLPNCFTCTEIPLTTTDFHERLIQHHLEENWRIDMLQGIESPKFTIYSLFWYQIDENVQREIINHRSLRHPNIIRFKEVLLTPTHLAIVLEYASGGELFERICSAGRFSEDEARYFFQQLISGVSYCHSMEICHRDLKLENTLLDGKPSPRLKICDFGYSKSALLHSQPKSTVGTPAYIAPEVLSRKEYDGKISDVWSCGVTLYVMLVGAYPFEDPEDPRNFRKTIGRIIGVQYSIPDYVRVSSECRNLLSSIFVADPAKRITIPEIKQNPWFLKNLPKEIIEAERKGFEETEKDQPSQKVEEIMKIIQEARVPGQGSKAGDGMGGQGATGSLDIEDVEEIDVSGDYEHV 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00222 394 SUPERFAMILY Protein kinase-like (PK-like) 3 324 IPR011009 -
Vimu11g00222 394 Gene3D Phosphorylase Kinase; domain 1 91 136 - -
Vimu11g00222 394 Gene3D Phosphorylase Kinase; domain 1 1 68 - -
Vimu11g00222 394 PANTHER SERINE/THREONINE KINASE 3 340 - -
Vimu11g00222 394 FunFam Serine/threonine-protein kinase SRK2E 137 325 - -
Vimu11g00222 394 ProSitePatterns Serine/Threonine protein kinases active-site signature. 176 188 IPR008271 GO:0004672|GO:0006468
Vimu11g00222 394 MobiDBLite consensus disorder prediction 356 394 - -
Vimu11g00222 394 ProSitePatterns Protein kinases ATP-binding region signature. 11 34 IPR017441 GO:0005524
Vimu11g00222 394 SMART serkin_6 5 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00222 394 ProSiteProfiles Protein kinase domain profile. 5 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00222 394 Pfam Protein kinase domain 99 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00222 394 Gene3D Transferase(Phosphotransferase) domain 1 137 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00222 Vimu-Chr11 2165703 2169176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00222 100 325 CBL-interacting serine-threonine protein kinases AT5G25110 45.923 2.38e-61 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Vimu11g00222 Pkinase 3.5e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00222 K14498 - gmx:100782714 549.28