Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00212 ATGGTAAGGGTCCCGTGTAGTTATTCTGGCTACAATGTCGTGTTTAAGGTCCATGAACACAGCAGAAACCCTGACTACTTTGCTGTCGTGGTTCTCTATGTAGACGGAACATATGATGTCACTGCTGTTGAGTTGTTTCAGCAAGACTGCCAAGAATGGAAGGCATTGCGCAGGGCCTTTGGGGCAATGTTTGACTATAGCAACCCTCCAAGAGGTGAAATATACTTGAGATTCCAAGTCAGTGGCAGTGCAGGGATTTATTGGGTTCAGTCCAGGAATGCTATCTCTAGTGATTGGACGGCCGGAGCAACATATGACACCATGGTGCAGCTTAATTAG 339 0.4661 MVRVPCSYSGYNVVFKVHEHSRNPDYFAVVVLYVDGTYDVTAVELFQQDCQEWKALRRAFGAMFDYSNPPRGEIYLRFQVSGSAGIYWVQSRNAISSDWTAGATYDTMVQLN 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00212 112 Pfam Expansin C-terminal domain 13 95 IPR007117 -
Vimu11g00212 112 SUPERFAMILY PHL pollen allergen 12 106 IPR036749 -
Vimu11g00212 112 Gene3D - 5 108 IPR036749 -
Vimu11g00212 112 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 25 107 IPR007117 -
Vimu11g00212 112 PANTHER EXPANSIN-B3 3 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00212 Vimu-Chr11 2016163 2016675 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00212 3 111 Expansin Gene Family AT4G17030 60.550 2.05e-48 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00212 - - gmx:100779487 219.164