Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00211 ATGCATATTTTAGCGGGAGCTTGTGGATTTGGAGAATATGGAAGGAAGATGAATTGGTACGACGGAAGTGTCGCAGGAGTCTCTGGGCTGTGGAGGAATGGAGTTGGCTGTGGGACATGCTATCAGGTAAAGTGCCTTATAGAAAAGCTATGCGATGAGAATGGAGCATACCTGGTGGCAACAGACCAGGGTTACGGAGACAACACAGACTTCGTGATGAGCCCACGCGCCTTCACACAACTGGGACGTGATGAGAATGCTTACGAAGAGCTTAAGAAATACGGTACAGTGGATATTGAATACAGAAGGGTTCCATGTACCTATACCGGCAACGTCGTGTTCTATATCAAGGAAACTAGCAGCAACCCTGGTTACTTTGCTGTGGTCCTTCTGAATGTGAACGGAATAAACGACGTGACTGCGGTTGAAATGTGGCAGTCTGGAGAATGGAAGGCACTTAACAGGAACTATGGAGCAGTGTTTGACTTTGCTAACCCTCCGAGTGGCGAGATCAGGTTGAGGTTTAAGGTGAGTGGCCGGTCTGATTGGGTGGACCCCAAGATTGTCATTCCTAGTTACTGGCAGCCTGGAAGCACTTATGTCACCGAGGTTCAGCTTAAATAG 624 0.4824 MHILAGACGFGEYGRKMNWYDGSVAGVSGLWRNGVGCGTCYQVKCLIEKLCDENGAYLVATDQGYGDNTDFVMSPRAFTQLGRDENAYEELKKYGTVDIEYRRVPCTYTGNVVFYIKETSSNPGYFAVVLLNVNGINDVTAVEMWQSGEWKALNRNYGAVFDFANPPSGEIRLRFKVSGRSDWVDPKIVIPSYWQPGSTYVTEVQLK 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00211 207 Pfam Expansin C-terminal domain 112 191 IPR007117 -
Vimu11g00211 207 SUPERFAMILY Barwin-like endoglucanases 5 111 IPR036908 -
Vimu11g00211 207 PRINTS Expansin/Lol pI family signature 4 22 IPR007118 GO:0005576
Vimu11g00211 207 PRINTS Expansin/Lol pI family signature 27 45 IPR007118 GO:0005576
Vimu11g00211 207 PRINTS Expansin/Lol pI family signature 94 110 IPR007118 GO:0005576
Vimu11g00211 207 PRINTS Expansin/Lol pI family signature 188 202 IPR007118 GO:0005576
Vimu11g00211 207 PRINTS Expansin/Lol pI family signature 150 164 IPR007118 GO:0005576
Vimu11g00211 207 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 5 111 IPR007112 -
Vimu11g00211 207 Pfam Lytic transglycolase 24 101 IPR009009 -
Vimu11g00211 207 Gene3D - 107 202 IPR036749 -
Vimu11g00211 207 SUPERFAMILY PHL pollen allergen 111 201 IPR036749 -
Vimu11g00211 207 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 124 202 IPR007117 -
Vimu11g00211 207 Gene3D - 2 106 IPR036908 -
Vimu11g00211 207 PANTHER EXPANSIN-B3 6 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00211 Vimu-Chr11 2007067 2008035 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00211 6 206 Expansin Gene Family AT4G17030 46.860 6.87e-63 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00211 - - gmx:100778963 367.851