Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00209 ATGGAACTCGGTTTTAAGCACCAAGTCGGTGTGGTGTGTGCGATATTGCTCCTCCCTGCACTATGTAGCTGCTACGAATATGCAACGCAAGCTATTACAGTAGCCCTGGTGGCTATGGGAATCCCAGGGGAGCTTGTGGATACGGACGATGAACAATGGCAATGTTGTAGCCGTATCAGGAGGACTATGGCGGAATGGAGCTGGTTGTGGTGCATGCTACAAGCAGAATACTGCATCGCGAAAGGAGTGTACGTGGTGGCAACAGACAATGGCGAGGGAGACAGAACAGAGTTCATAATGAGCAAATGTGGGTTCTCAGAATTGGGAAAGAACGCAGCTGCTTCTGCGAAACTGTTAAAGGAAGGGGTAGTGGGTATTTCATTCAAAAGGGTTCCCTGCACATTCCCTTCTAACATCAAGCTCCAGGTCCACGAAAGCAGCAAAAACCCCTCCTACTTTGCTCTTGTGCTTCTCAACGTAAATGGAATGAGTGACATCACTGCTGTAGAGATATGGCAGAGAGGGCAGAAACGATGGGAGCCACTCCGAAGGGCCTATGGGGCACTCTTTGACTTTGCTAACCCACCCACCGGTCAAATCCGTCTCAGGTTTCAACTCGGCTATAGATATTGGCTCCTTCCCGAGATTCCTATTCCTGCTAACTGGAACCCTGGAGCTACTTATGACTCCCAAGTTCAGCTTCATTAG 708 0.4944 MELGFKHQVGVVCAILLLPALCSCYEYATQAITVALVAMGIPGELVDTDDEQWQCCSRIRRTMAEWSWLWCMLQAEYCIAKGVYVVATDNGEGDRTEFIMSKCGFSELGKNAAASAKLLKEGVVGISFKRVPCTFPSNIKLQVHESSKNPSYFALVLLNVNGMSDITAVEIWQRGQKRWEPLRRAYGALFDFANPPTGQIRLRFQLGYRYWLLPEIPIPANWNPGATYDSQVQLH 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00209 235 SUPERFAMILY PHL pollen allergen 138 230 IPR036749 -
Vimu11g00209 235 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Vimu11g00209 235 PANTHER EXPANSIN-B3 71 233 - -
Vimu11g00209 235 Pfam Expansin C-terminal domain 139 212 IPR007117 -
Vimu11g00209 235 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 56 138 IPR007112 -
Vimu11g00209 235 Gene3D - 136 235 IPR036749 -
Vimu11g00209 235 SUPERFAMILY Barwin-like endoglucanases 74 137 IPR036908 -
Vimu11g00209 235 Gene3D - 23 134 IPR036908 -
Vimu11g00209 235 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 151 230 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00209 Vimu-Chr11 1999003 1999927 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00209 77 234 Expansin Gene Family AT4G17030 41.975 1.53e-40 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00209 - - gmx:100776296 263.848