Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00208 ATGGAACTCGGTTTTAGGCACCAACTTGGCCTTGTTTGTGTCATATTCCTCTTCCCTGCACTGTGCAACTGCAAGGAATACTTCACCAACTCAAGAGCAACCTATTATGGCAGCCCTGACGGCTACGCTGGAGCTTGTGGATTCGGGGAGTATGGAAGGAAGATGAATTGGTATGATGGAAGAGTGGCAGGGGTCTCTGGGCTATGGAGGAATGGAGCTGGTTGTGGCACGTGTTATCAGGTAAAGTGCAAAATACCAGAACTGTGCGATGTGAATGGAGCATTCCTGGTGGCAACAGACCAGGGTTATGGAGACAGAACGGACTTCGTGATGAGCCCAAGGGCGTTCTCAAGATTGGGACGCAATCAAAATGCATCTGCAGAGCTAAAGAAATACGGTACAGTGGACATTGCATACAGAAGAGTTCCATGTACGTTCATCGGCAACGTCTTGTTTCACATAAAGGAAAGTAGCAGCAACCCTGGTTACTTGGCCGTTCTGATTCTGAATGTAAATGGAAAATACGACGTCAATGGTGTTGAAATGTGGCAGAAACAGCAACAACGTTGGGAACCCCTTCGCAGGGTGTATGGGGCAGTGTTTGACTTTGCAAATCCACCGAGAGGTGCAATCCTGCTGAGGTTTCAAGTTGGCGTTAATTGGATGACACCAAACATCCCTATCCCTTCTAATTGGAAGCCTGGAGCTACTTATGACACCAAACTTCAGCTTTATTAG 738 0.4743 MELGFRHQLGLVCVIFLFPALCNCKEYFTNSRATYYGSPDGYAGACGFGEYGRKMNWYDGRVAGVSGLWRNGAGCGTCYQVKCKIPELCDVNGAFLVATDQGYGDRTDFVMSPRAFSRLGRNQNASAELKKYGTVDIAYRRVPCTFIGNVLFHIKESSSNPGYLAVLILNVNGKYDVNGVEMWQKQQQRWEPLRRVYGAVFDFANPPRGAILLRFQVGVNWMTPNIPIPSNWKPGATYDTKLQLY 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00208 245 Gene3D - 148 245 IPR036749 -
Vimu11g00208 245 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Vimu11g00208 245 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Vimu11g00208 245 PRINTS Expansin/Lol pI family signature 132 148 IPR007118 GO:0005576
Vimu11g00208 245 PRINTS Expansin/Lol pI family signature 226 240 IPR007118 GO:0005576
Vimu11g00208 245 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 43 149 IPR007112 -
Vimu11g00208 245 Pfam Lytic transglycolase 62 131 IPR009009 -
Vimu11g00208 245 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 162 240 IPR007117 -
Vimu11g00208 245 PANTHER EXPANSIN-B3 18 243 - -
Vimu11g00208 245 SUPERFAMILY Barwin-like endoglucanases 14 149 IPR036908 -
Vimu11g00208 245 Gene3D - 20 145 IPR036908 -
Vimu11g00208 245 Pfam Expansin C-terminal domain 151 221 IPR007117 -
Vimu11g00208 245 SUPERFAMILY PHL pollen allergen 149 239 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00208 Vimu-Chr11 1996272 1997372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00208 9 244 Expansin Gene Family AT4G17030 49.388 1.96e-77 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00208 - - gmx:100778424 412.92