Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00206 ATGCAACAAGCACTGAGCGGACAAATGTTAATAGTTTTGGTTCAAATGAAAGCATTGTCTTCCTACCATTCTGCAGGCACACCACTTTGGCGTAACGGGCCACCTGAGAAGCCTGTACTATGCAATGCATGTGGATCTCGATGGAGGACCAAGGGAACACTTGCAAATTATACCCCTTTGCATGCACGGGCAGAAAGTGCTGATTATGAGGATCAGAAGGTTTCCAGGGTAAAAAGCATATCATTAAATAAGAACAAAGAAGTGAAATTGGTCAAGAGAAAGCAGAACTATGATAATGCTGCATCTGGAGGGTTCGTTCCAGATTATAATCAAGGACACCTAAAGGTTGTGGATGAAGATACAAGCAACAGATCAAGCTCCGGGTCAGCTATTTCTAACTCGGAGAGCTGTGCTCAATTTGGTGGCACAGATGCTAGTGATTTGACAGGTCCTGCACAGTCAGTGGTCTGGGATGCCATGGTGCCTTCTAAAAAGAGGACATGTTCAGGTCGTCCAAAGCCTTCATCTGTTGAGAAGCTCACAAGAGACCTGTGTACTATTCTTCATGAACAACAGTCTTGTTTCTCTGCATCTTCTGAAGAGGATCTTCTTTTGGAAAGTGACACACCAATGGTCTCTGTTGAGATAGGACATGGAAGCATTCTCATCAGGCATCCTAGCTCTATAGCTCGTGATGAAGAGTCCGAGGCCAGCTCTCTTTCAGTTGATAATAAACAATGCCTAATGAATGAAGCATATTCATTCTCTAGTACGATTCCTTTGTATAGTAGTGATCACAGTGGCATGAACTCTTCATCTCAAGGAATTGAAAAGATAGAAAACTCAGCTGGCCAAATCATGCAACAAGAGAAACTTGAAAGGCATGATGTGGTTAACTATGAGGAGTTTATGAGGAACTTGACAAATGAAGAGCAGCAGCAATTACTAAAGTATCTTCCTGTGCAAGTCGCTGTGCTCTTTACTCTTCAAGTCCGTCCTTTCAAAGGAGGGAGCCTTAAAAACATGTTCAGTAGCTTCCAATTCAAGGAGAACTTGACTTATTTTCAGCAACTTCTTGGGGAAGGTGTCTTTGACATCTCTTTGTTGGGGACAAAACCTGAAGAATGGAAGACATTGAAAAGGCTTGTGTTATCTAATATGTCAAAATCAAAATGGGTAGAACACTATAATTTTCTCAAGAAATGTGAAAACAAAGCTGGAAAAACTAATGGTCCAGGATCTACTGCTATGGAATCAAGTAATATTACAAATGCCAAGAGAATGCGTGAGCATGACAGCCAAAGTCAAAATTTTGCAGTTATTGTACAAATTTCAGAATTGAAGACAACAATGAGGAGCCCCAAAAGGGTGATCATAAATCCGGTATGTGAAGGCAAAGAAGTTGTAGAAGAAGGCTCAAGCTTCAGCCCAAAAAGCCTTTTTTCTTTGCCACATGGTGTTGGTGGCTTGCACATGCTGGATTCTTGTAACTATGTTGGTGAGAGTTCTGAGGATCTGCTGTTAGATGTGCCTTCTAACAGTTCTTTTCCGCAGGCAGAGCTCCTGCTCCCAACTTTAAGCTATGGTGCTAAGTACACTCAACTGTTACTCATCATCCTTAATAGGGTCCAAATATATGCATCTGAAACACCAAAATTCCTGTACAAGAGATATGATGGTTGTGTTTTTGTTTCCTTGCAACCTTGA 1707 0.4153 MQQALSGQMLIVLVQMKALSSYHSAGTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAESADYEDQKVSRVKSISLNKNKEVKLVKRKQNYDNAASGGFVPDYNQGHLKVVDEDTSNRSSSGSAISNSESCAQFGGTDASDLTGPAQSVVWDAMVPSKKRTCSGRPKPSSVEKLTRDLCTILHEQQSCFSASSEEDLLLESDTPMVSVEIGHGSILIRHPSSIARDEESEASSLSVDNKQCLMNEAYSFSSTIPLYSSDHSGMNSSSQGIEKIENSAGQIMQQEKLERHDVVNYEEFMRNLTNEEQQQLLKYLPVQVAVLFTLQVRPFKGGSLKNMFSSFQFKENLTYFQQLLGEGVFDISLLGTKPEEWKTLKRLVLSNMSKSKWVEHYNFLKKCENKAGKTNGPGSTAMESSNITNAKRMREHDSQSQNFAVIVQISELKTTMRSPKRVIINPVCEGKEVVEEGSSFSPKSLFSLPHGVGGLHMLDSCNYVGESSEDLLLDVPSNSSFPQAELLLPTLSYGAKYTQLLLIILNRVQIYASETPKFLYKRYDGCVFVSLQP 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00206 568 Pfam GATA zinc finger 25 53 IPR000679 GO:0006355|GO:0043565
Vimu11g00206 568 Gene3D - 21 98 IPR013088 GO:0006355|GO:0008270
Vimu11g00206 568 CDD ZnF_GATA 27 66 IPR000679 GO:0006355|GO:0043565
Vimu11g00206 568 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 24 57 - -
Vimu11g00206 568 PANTHER OSJNBB0038F03.10 PROTEIN 22 525 IPR044589 -
Vimu11g00206 568 SMART GATA_3 18 67 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00206 Vimu-Chr11 1986022 1990269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00206 22 522 C2C2-Gata Transcription Factor Family AT4G17570 48.008 8.23e-118 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vimu11g00206 GATA 5.9e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00206 - - vum:124834311 897.116