Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00198 ATGCAGGGTACATTGAACCAACCTACTCAGAAGAGGGCAAGAATACAAGAAAAAAACAACGAAATTTGTGATCCTGGACCAAGATCAATAATGGAAGAAGGTCCATCATCATTGCCCGGAAGACAAGCAACAAACAACAAAAGAGGTTCACTTTGGCTTGAAGGAGTTAGGTCATGTAAACGAGGCACAAAAAGGGGCATGCAGGATACGTCTAGCCAACCTACTCAGAAGAGGGTGAGAATAGTAGAACAAAACAAAGAAGTTAATAATCCTGGACCAAACTCAATAATGGAAATTAGTCCATCATCACTTGAAAGACAAGCAGCAAACATGAAAAGAGGTTCACCTTCATCTGATAGAGTACGGTCATGTAAGAAAACAACGTTTTTATGGTTGATAGACTCTAAGATTATTAACGAAGATGAACGAGTAAGCTATAGGAGTGCCACAATTGAAAAGCCATTAGCAGGAAGGATTACTAGGGGTGGAATTCTCTGCAGCTGTTGCCAGGAGGAGATATCAATGTGGACCTTTGAGAACCATGCTGGAAGTACTCTTAGACAGCCCTATAAACATATTTACATTCACAGAAAACGCAAAACCCTCCGAAAATGCTTGATTGATGTTTGGCAACATGCCCGGGAACAAAAGCGTCGGCGAATGTTTTTGTTTGTGCCGAAAGAAACTGATGTAGACCAAGATGATGATGTTTGTTCAGTCTGTGGTGATGGGGGAGACTTAATCTGTTGTGACAGGTGTCCTTCCACATATCATCTATCTTGCATAAATATAGAGACGGTTCCCCAAAATGATTGGTTTTGTCCATATTGTGTATGCAAATACTGTGGGCTGGTTGTGGACCTGGTTGTTGAGAAAAAAAGATACTATGAGAAGAAAGAAGGCTTCAAGTGCTCCCAATGTGACAAGAAGTATCATTGGGAGTGCTTTGAAAAATATGAAAAAGATTCCTCAAAACAAACTAAACCTTCAAGATCATATTGCGGGCGAGGTTGCCAAGGGATATATGCAAAAATGGGAGTATATCTCGGAATCAGAAAGGATTATTCGGCAAAATACTCTTGGAGGGTTATCCGCGTAATGGAGACATACAAGAACAATCCTGAATATATGAATCTATTCTTAGAAAACAATTCAAAGGTTGCAGTTACTTGGATGTTAATGAATGAAGCTTTTGAGAAAATAACTGACAGGAAAACAGGCATCAATGTGGTTCGAAGTATTGTTTACAGCTGCAAGTCAAACTTATCCAGGATTGATTTTAGCCGTTTTTATATGTTTGTTCTGGAGGAAGATGATGCGATAATTGCTGCAGCTTCTATAAGATTTCACGGGTCAGGGATTGCAGAAATGCCACTTATTGCAACAGAAGTGACACGCAGGGGCCAAGGAGTTTGCAAGGAATTAATGAGGGTAATTGAATCGTTCCTATGCAATCTTAAAGTCAAAAACTTGATAATTCCATCTGCTGTGGAGACTTGTGATATGTGGAAGCGCAAGTACAACTTTACTGAGGTGAGTGAAGAGCTGAAGAAAGAAATATCCTCCTATAAAATTGTAATGTTCCCTGGTGCTGTAAGACTGTACAAGGACTTGTCAGCAAGCATAGCAGAAATTGAGATTGACCTGGAACCACAAACAGAGCATGCAGAGGTTACTGCTAGACTTGAGCATGGACCCTCTCACCAGGAAGATTAG 1716 0.4033 MQGTLNQPTQKRARIQEKNNEICDPGPRSIMEEGPSSLPGRQATNNKRGSLWLEGVRSCKRGTKRGMQDTSSQPTQKRVRIVEQNKEVNNPGPNSIMEISPSSLERQAANMKRGSPSSDRVRSCKKTTFLWLIDSKIINEDERVSYRSATIEKPLAGRITRGGILCSCCQEEISMWTFENHAGSTLRQPYKHIYIHRKRKTLRKCLIDVWQHAREQKRRRMFLFVPKETDVDQDDDVCSVCGDGGDLICCDRCPSTYHLSCINIETVPQNDWFCPYCVCKYCGLVVDLVVEKKRYYEKKEGFKCSQCDKKYHWECFEKYEKDSSKQTKPSRSYCGRGCQGIYAKMGVYLGIRKDYSAKYSWRVIRVMETYKNNPEYMNLFLENNSKVAVTWMLMNEAFEKITDRKTGINVVRSIVYSCKSNLSRIDFSRFYMFVLEEDDAIIAAASIRFHGSGIAEMPLIATEVTRRGQGVCKELMRVIESFLCNLKVKNLIIPSAVETCDMWKRKYNFTEVSEELKKEISSYKIVMFPGAVRLYKDLSASIAEIEIDLEPQTEHAEVTARLEHGPSHQED 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00198 571 CDD PHD2_CHD_II 237 277 - -
Vimu11g00198 571 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 424 514 IPR016181 -
Vimu11g00198 571 Gene3D - 408 527 - -
Vimu11g00198 571 Pfam Tify domain binding domain 157 207 IPR032308 -
Vimu11g00198 571 PANTHER PHD FINGER PROTEIN 12 84 543 IPR042163 GO:0003714|GO:0045892
Vimu11g00198 571 CDD NAT_SF 432 493 - -
Vimu11g00198 571 SMART PHD_3 279 339 IPR001965 -
Vimu11g00198 571 SMART PHD_3 237 278 IPR001965 -
Vimu11g00198 571 Pfam PHD-finger 237 279 IPR019787 -
Vimu11g00198 571 ProSiteProfiles Zinc finger PHD-type profile. 235 280 IPR019787 -
Vimu11g00198 571 SUPERFAMILY FYVE/PHD zinc finger 210 280 IPR011011 -
Vimu11g00198 571 MobiDBLite consensus disorder prediction 1 50 - -
Vimu11g00198 571 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 226 328 IPR013083 -
Vimu11g00198 571 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 392 539 IPR000182 GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00198 Vimu-Chr11 1890656 1893481 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00198 125 540 PHD Transcription Factor Family AT4G14920 39.243 3.99e-101 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vimu11g00198 TDBD 4.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00198 - - vum:124834316 1114.37