Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00194 ATGTACGGACACAGTACATACGAATCAGATTTGGCACTCCATTCGATTCGCCGCCACTTGCTCGGCGATTCCGAATCAATACTCGGAATCCCCGCATGTGCATCGGGTCGGGCATCCGGTGTCAGCCTATTGTATTCCTGTTTGAGCGACAATTGGGGTGACCTTCCGTTAAAGGAGGATGATTCCGAAGACATGGTACTCTACGGCGTGCTCCGTGACGCCGTTAACGTGGGGTGGGTCCCATCTCTGGAGGCCGGGTCGCCCGACACCGTGTTGTCGGGTTTTCCTACGGATTTCACGGTGAAGCTGGAACCGGACGTGTTGCCAACGGTGACGAGTTCGCCTCCTTTGACAGCGGTGGTGAAGCAGGAGAAGCAGGCTTCTCCGGCGAAGGGGAAGCACTACCGCGGCGTGAGACAGAGGCCGTGGGGGAAGTTCGCGGCAGAGATCCGGGACCCGGCGAAAAACGGGGCGCGGGTTTGGCTGGGAACGTTTGAGACCGCGGAGGATGCGGCGTTAGCCTACGACCGTGCCGCCTACCGTATGCGGGGTTCGAGGGCGTTGCTGAATTTTCCTTTGAGAGTTAACTCCGGCGAACCCGAGCCGGTGAGGGTGAGTTCGAAGCGGTGTTCATCGCCGGAAAGTGGGACGGGTCCGGCGAAGAAGAAGAAAGTGGGGGGGTCTGGGCAAGTGGGGAGTCAAGTGGCAGAATGCATACGTGGCGAAGAATTATTGGCGAGGTGA 744 0.5887 MYGHSTYESDLALHSIRRHLLGDSESILGIPACASGRASGVSLLYSCLSDNWGDLPLKEDDSEDMVLYGVLRDAVNVGWVPSLEAGSPDTVLSGFPTDFTVKLEPDVLPTVTSSPPLTAVVKQEKQASPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPEPVRVSSKRCSSPESGTGPAKKKKVGGSGQVGSQVAECIRGEELLAR 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00194 247 PRINTS Ethylene responsive element binding protein signature 135 146 IPR001471 GO:0003700|GO:0006355
Vimu11g00194 247 PRINTS Ethylene responsive element binding protein signature 158 174 IPR001471 GO:0003700|GO:0006355
Vimu11g00194 247 FunFam Ethylene-responsive transcription factor 2 133 193 - -
Vimu11g00194 247 SUPERFAMILY DNA-binding domain 134 194 IPR016177 GO:0003677
Vimu11g00194 247 CDD AP2 133 192 IPR001471 GO:0003700|GO:0006355
Vimu11g00194 247 Pfam AP2 domain 134 184 IPR001471 GO:0003700|GO:0006355
Vimu11g00194 247 PANTHER DNA-BINDING DOMAIN 122 216 IPR044808 GO:0003700|GO:0009873
Vimu11g00194 247 SMART rav1_2 134 198 IPR001471 GO:0003700|GO:0006355
Vimu11g00194 247 Gene3D AP2/ERF domain 133 195 IPR036955 GO:0003700|GO:0006355
Vimu11g00194 247 MobiDBLite consensus disorder prediction 198 232 - -
Vimu11g00194 247 ProSiteProfiles AP2/ERF domain profile. 134 192 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00194 Vimu-Chr11 1849084 1849827 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00194 8 245 AP2-EREBP Transcription Factor Family AT4G17500 55.185 8.40e-80 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu11g00194 AP2 9.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00194 K09286 - gmx:100803653 340.117