Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00193 ATGGCCAACGCAGCTGAACTTTCAGCTTTGAATCGCATCAAGTTGCATCTTTTAGGTGAACTCTCTCCACTCGCCACTCCCCAAAATAAGCAACCTTCCTTTCAATTTAATCAAAGCCCTTCTCAATCTTCTTCCTCTGATTCTTGCCTCTCCTTCAATTACTACTTCACTGAGCTACTCGACCCTCAAATTCAATTACCCCTTTTCGAATTCGACTCCAAACCCCAAATAATCGACCTCGACACCCCGAAACCCCTCACATCGCTTCACAAGAAACCTCAATTAAATCGGAAACCTTCTCTGCAAATCTCTCTCCCCAAGAAGACCGAGTGGATCCAATTTGAGAAACCGGATCCCAACCCGCCTGTGGTATTGCCCGAGAACCAGCCCGAGAAGAAGCACTACAGAGGAGTCCGGCAGCGGCCTTGGGGAAAGTTCGCCGCCGAGATCCGCGACCCGAACAAGCGCGGGTCGAGAGTGTGGCTTGGAACCTTCGACACCGCCATCGAGGCCGCCAAGGCTTACGACCGTGCTGCCTTCAGGCTCCGCGGGTCAAAGGCCATCCTCAACTTCCCGCTCGAAGCAGGCGCGGTGGAGGAGGCCACCGACGCCGAAGGCGAAAGGAAGCGGCGGCGCGAGGAGGAGGAGGTAGAGGAAGTGAAGCCAGTTGTGAAGAAGGAGAAAACGACGGAACAGGAGGTGAACTGTTTTCGGGAGATGCCGTTAACGCCGTCTATGTGGACCGGGTTCTGGGATAATGATGTGAAGGAGATCTTCAACGTTCCGCCGTTGTCGCCGTTATCTCCTCTTCCGGCTTTTGGATTTTCACAACTAATGGTTGTGTGA 846 0.5319 MANAAELSALNRIKLHLLGELSPLATPQNKQPSFQFNQSPSQSSSSDSCLSFNYYFTELLDPQIQLPLFEFDSKPQIIDLDTPKPLTSLHKKPQLNRKPSLQISLPKKTEWIQFEKPDPNPPVVLPENQPEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAAKAYDRAAFRLRGSKAILNFPLEAGAVEEATDAEGERKRRREEEEVEEVKPVVKKEKTTEQEVNCFREMPLTPSMWTGFWDNDVKEIFNVPPLSPLSPLPAFGFSQLMVV 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00193 281 Pfam AP2 domain 134 184 IPR001471 GO:0003700|GO:0006355
Vimu11g00193 281 FunFam Ethylene-responsive transcription factor 2 133 194 - -
Vimu11g00193 281 ProSiteProfiles AP2/ERF domain profile. 134 192 IPR001471 GO:0003700|GO:0006355
Vimu11g00193 281 MobiDBLite consensus disorder prediction 115 138 - -
Vimu11g00193 281 SMART rav1_2 134 198 IPR001471 GO:0003700|GO:0006355
Vimu11g00193 281 PRINTS Ethylene responsive element binding protein signature 135 146 IPR001471 GO:0003700|GO:0006355
Vimu11g00193 281 PRINTS Ethylene responsive element binding protein signature 174 194 IPR001471 GO:0003700|GO:0006355
Vimu11g00193 281 CDD AP2 133 192 IPR001471 GO:0003700|GO:0006355
Vimu11g00193 281 Gene3D AP2/ERF domain 133 194 IPR036955 GO:0003700|GO:0006355
Vimu11g00193 281 PANTHER DNA-BINDING DOMAIN 102 216 IPR044808 GO:0003700|GO:0009873
Vimu11g00193 281 SUPERFAMILY DNA-binding domain 134 193 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00193 Vimu-Chr11 1825118 1825963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00193 1 281 AP2-EREBP Transcription Factor Family AT5G47230 49.355 1.27e-74 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu11g00193 AP2 5.8e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00193 K09286 - gmx:100800453 370.163