Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00190 ATGCATATAGAGGAATTGAAGGGGGGTGACAGAGAAGAAGGTGAGGGGGAAAGAGGGTTGACGCTTCTGGGTTATGATGCAAAGAGGGCGTTGGTTGGAGCAGGTGCTCGTGTGCTATTCTACCCAACCCTTTTTTACAATGTTGTCAGGAATAAGATTGAGGCTGATTTCCGATGGTGGGATAAGGTTGATGAGTTCATATTGTTAGGTGCTGTTCCATTTCCTATTGATGTTCCACACTTGAAGGAGCTTGGTGTTCGTGGGGTCATCACATTGAATGAGTCATATGAAACTTTGGTTCCGACAACATTATATTATACTCACGGAATTAACCACTTAGTGATCCCTACTAGAGATTACTATTTTGCTCCTTCACTGCATGACATACGACGTGCTGTGAACTTCATACATGAAAATGCATTATCTGGACGCACTACATATGTGCATTGCAAAGCTGGACGTGGCCGCAGCACAACTATTGTTATTTGTTATCTGGTGCACCACAAAATGATGACACCTGATGCTGCATATGATTATTTGAAATCAATTCGACCAAGGGTGCTTCTAGCTTCCTCTCAGTGGCAAGTTGTCCAAGAATACTACCACCATATTATGGTGAGGAGGGCAGTTGGACGTGCTCCTTCAACCAATCTATTGGTAAAGGCTTCTGAAGGGGCACTAGATTCACAAGATGTTGTGATATTTGATGACAGTTCTTTTGTCATGGTAACTGGGTCAGATTTAGAAGGTTACAACCCAAGTAATGAATCGAGAACTGTGGCAAGTGAAATATGGGCAGATTTAAGTGTTGTGTATCGTGTAAGAGTTGCTGGACAAGCGGCATTTGAGAGAATATCCTGCCTTTGGCTACGATACGGTACTAATCACAATACTTTTACTGCGAAACCAAGCAATCGTCACTTGGGAGAAATTAATGTTGATATCCACATGTACTGA 957 0.4253 MHIEELKGGDREEGEGERGLTLLGYDAKRALVGAGARVLFYPTLFYNVVRNKIEADFRWWDKVDEFILLGAVPFPIDVPHLKELGVRGVITLNESYETLVPTTLYYTHGINHLVIPTRDYYFAPSLHDIRRAVNFIHENALSGRTTYVHCKAGRGRSTTIVICYLVHHKMMTPDAAYDYLKSIRPRVLLASSQWQVVQEYYHHIMVRRAVGRAPSTNLLVKASEGALDSQDVVIFDDSSFVMVTGSDLEGYNPSNESRTVASEIWADLSVVYRVRVAGQAAFERISCLWLRYGTNHNTFTAKPSNRHLGEINVDIHMY 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00190 318 PANTHER PHOSPHATIDYLINOSITOL PHOSPHATASE 1 290 - -
Vimu11g00190 318 Gene3D Protein tyrosine phosphatase superfamily 59 209 IPR029021 -
Vimu11g00190 318 ProSiteProfiles Dual specificity protein phosphatase domain profile. 59 206 IPR020422 GO:0006470|GO:0008138
Vimu11g00190 318 SMART ptp_7 101 212 IPR003595 -
Vimu11g00190 318 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 51 203 IPR029021 -
Vimu11g00190 318 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 127 195 IPR000387 GO:0016311|GO:0016791
Vimu11g00190 318 Pfam Dual specificity phosphatase, catalytic domain 81 201 IPR000340 GO:0008138|GO:0016311
Vimu11g00190 318 SMART dsp_5 62 203 IPR020422 GO:0006470|GO:0008138
Vimu11g00190 318 ProSitePatterns Tyrosine specific protein phosphatases active site. 148 158 IPR016130 GO:0016311|GO:0016791
Vimu11g00190 318 FunFam Dual specificity phosphatase domain protein 59 207 - -
Vimu11g00190 318 CDD PTPMT1 59 201 IPR044596 GO:0004721
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00190 Vimu-Chr11 1785078 1789089 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00190 1 318 Protein tyrosine phosphatase (PTP) family AT2G35680 56.765 2.62e-126 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00190 - - gmx:100790413 495.738