Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00188 ATGGAATTAGTTGTGGTGTTGTGGAGTGGGAGTTATCCAGGAAAGATGGCAAAGGAGGTGGGTGGTATTATTTTGGGGGCAAATGTCATGATTGAGATAACTGGCCTTGCTGACATAAATCTAAGCCTCAACTTCCGTCACAATATTCCCAATCCTCAACATCTTACTCTCATCTCCTCCTCTACTCATTCCTCTTCCCCTTCCGCTTCAAATCCTTTTAAACCCTCTTGGAATCACGCTTCCGCTTCTTCGGATCGAAACTCGGACACATGCAGAGGCGAAACCCGATCGTTCCTGCGCGGAATCGACGTGAACCGGTTACCTTCGGCCGTGGACATGGAAGAGGAAGCGGGAGTTTCGTCTCCGAACAGCACCGTTTCGAGCGTGAGCGGAAAGCGAAGCGAGCGAGAACCCACCGGCGAAGAACACGACATGAACAGAGCCTGTTCCCGCGGAATCAGCGACGAAGAAGACGGCGAAACCTCAAGGAAAAAACTCAGACTCTCCAAAGACCAATCAGCTATTCTGGAAGAAAGTTTCAAAGAGCACAATACCCTCAACCCGAAGCAAAAGCTGGCACTGGCAAAGCAGCTAGGTCTTCTACCAAGACAAGTGGAGGTGTGGTTCCAGAACCGAAGAGCAAGGACTAAGCTGAAGCAAACCGAGGTGGACTGCGAGGTGTTGAAAAGGTGCTGCGAGAATCTGACGGAGGAAAATAGAAGGTTGCAGAAGGAAGTCCAGGAGCTTAGAGCACTGAAACTTTCCCCTCAGTTTTACATGCAAATGACCCCTCCCACCACACTGACCATGTGCCCATCTTGCGAGAGGGTGGCTGTGCCGTCGTCGGCCGTGGATGCCGCCACGCGTCATCATCCGATGGGTCAGTCACAGAGCCACAGTCGGGCCCTAGGCATGGGGCCGTGGGGTTCGGCAGCTTCCATTCCGCAGCGAGGCTTTGATGGTTTCCACCACTGA 975 0.5262 MELVVVLWSGSYPGKMAKEVGGIILGANVMIEITGLADINLSLNFRHNIPNPQHLTLISSSTHSSSPSASNPFKPSWNHASASSDRNSDTCRGETRSFLRGIDVNRLPSAVDMEEEAGVSSPNSTVSSVSGKRSEREPTGEEHDMNRACSRGISDEEDGETSRKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLGLLPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERVAVPSSAVDAATRHHPMGQSQSHSRALGMGPWGSAASIPQRGFDGFHH 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00188 324 PRINTS Lambda-repressor HTH signature 199 215 IPR000047 GO:0003677
Vimu11g00188 324 PRINTS Lambda-repressor HTH signature 190 199 IPR000047 GO:0003677
Vimu11g00188 324 FunFam Homeobox-leucine zipper protein 18 150 224 - -
Vimu11g00188 324 SUPERFAMILY Homeodomain-like 152 220 IPR009057 -
Vimu11g00188 324 ProSiteProfiles 'Homeobox' domain profile. 159 219 IPR001356 GO:0003677
Vimu11g00188 324 Gene3D - 167 217 - -
Vimu11g00188 324 ProSitePatterns 'Homeobox' domain signature. 194 217 IPR017970 GO:0000981|GO:0006355
Vimu11g00188 324 Coils Coil 218 255 - -
Vimu11g00188 324 MobiDBLite consensus disorder prediction 60 88 - -
Vimu11g00188 324 MobiDBLite consensus disorder prediction 60 93 - -
Vimu11g00188 324 Pfam Homeodomain 163 217 IPR001356 GO:0003677
Vimu11g00188 324 SMART HOX_1 161 223 IPR001356 GO:0003677
Vimu11g00188 324 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 82 292 - -
Vimu11g00188 324 MobiDBLite consensus disorder prediction 118 133 - -
Vimu11g00188 324 MobiDBLite consensus disorder prediction 134 166 - -
Vimu11g00188 324 CDD bZIP 212 251 - -
Vimu11g00188 324 MobiDBLite consensus disorder prediction 111 166 - -
Vimu11g00188 324 CDD homeodomain 163 220 IPR001356 GO:0003677
Vimu11g00188 324 Pfam Homeobox associated leucine zipper 219 253 IPR003106 GO:0006355|GO:0043565
Vimu11g00188 324 MobiDBLite consensus disorder prediction 286 324 - -
Vimu11g00188 324 Pfam HD-ZIP protein N terminus 39 137 IPR006712 GO:0005634
Vimu11g00188 324 SMART halz 219 262 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00188 Vimu-Chr11 1765242 1767028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00188 76 314 Homeobox Transcription Factor Family AT4G16780 69.167 2.86e-101 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vimu11g00188 HD-ZIP_N 6.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00188 K09338 - gmx:100813367 462.611