Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00185 ATGGGCACAATTCCAGGACCTGCCCCAATCGTGGAGTCAAGCTGTTCGGATGCTAGTATGGGTAATCTCACCCATTATTCTGGTTCCGGGTCCGGACCTCTCCATGCGGGGTCAAACAATCCGGGTTCTCCTGGTGAAACCCCCGATCACGCTACCGCGGCCGATGGTTACGCCTCCGAGGACTTTGTTCCCGGTTCTTCTTCGAGCTCCCGTGAAAGAAAGAAGGGTGTTCCATGGACTGAGGAGGAACATAGAATGTTTTTACTCGGATTGCAGAAGCTGGGCAAAGGTGATTGGCGTGGAATTGCAAGGAACTATGTTATATCAAGGACACCTACTCAAGTGGCTAGTCATGCACAAAAGTATTTCATCAGGCAAAGCAATGTGTCCAGGCGGAAAAGACGGTCCAGCTTGTTTGATATTGTTGCAGATGAAGCAGCTGACACTGCAATGGTACAGCAAGACTTCTTGTCAGCTAATCAGTTACCGGTCGAAACAGAAGGCAATAACTCCTTGCCTGCGCCTCCTCCCCTCGACGAAGAGTGTGAATCCATGGATTCCACAAACTCAAATGATGGAGAACCTGCCCCATCAAAGCCTGAAAACACACAATCATCTTTTCCAGTTTTATATCCTGCATACTATTCTCCAGTGTTCCCATTTCCTCTGCCCTATTGGTCAGGATACAATCCAGAGCCCACCAAGATGGAGACGCATGAAGTGCTGAAGCCAACTGCAGTACATTCTAAAAGCCCAATCAATGTCGATGAACTGGTTGGCATCTCAAAACTGAGTCTAGGGGAGTCTATTGGTGATTCAGGCCCCTCCTCCCTGTCTCTTAAACTTCTTGAAGAAGGACCCTCGAGACAGTCAGCTTTCCATGCAACACCAACATGTAGTAGTTCAAATATGAATGGCAGTGCCATCCATGCAGTTTAA 939 0.4835 MGTIPGPAPIVESSCSDASMGNLTHYSGSGSGPLHAGSNNPGSPGETPDHATAADGYASEDFVPGSSSSSRERKKGVPWTEEEHRMFLLGLQKLGKGDWRGIARNYVISRTPTQVASHAQKYFIRQSNVSRRKRRSSLFDIVADEAADTAMVQQDFLSANQLPVETEGNNSLPAPPPLDEECESMDSTNSNDGEPAPSKPENTQSSFPVLYPAYYSPVFPFPLPYWSGYNPEPTKMETHEVLKPTAVHSKSPINVDELVGISKLSLGESIGDSGPSSLSLKLLEEGPSRQSAFHATPTCSSSNMNGSAIHAV 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00185 312 MobiDBLite consensus disorder prediction 289 312 - -
Vimu11g00185 312 NCBIfam myb-like DNA-binding domain, SHAQKYF class 74 126 IPR006447 GO:0003677
Vimu11g00185 312 SMART sant 75 125 IPR001005 -
Vimu11g00185 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 127 IPR017930 -
Vimu11g00185 312 ProSiteProfiles SANT domain profile. 79 127 IPR017884 -
Vimu11g00185 312 Gene3D - 77 129 - -
Vimu11g00185 312 FunFam transcription factor MYB1R1 77 128 - -
Vimu11g00185 312 Pfam Myb-like DNA-binding domain 78 123 IPR001005 -
Vimu11g00185 312 SUPERFAMILY Homeodomain-like 73 128 IPR009057 -
Vimu11g00185 312 CDD SANT 78 123 IPR001005 -
Vimu11g00185 312 MobiDBLite consensus disorder prediction 188 204 - -
Vimu11g00185 312 PANTHER TRANSCRIPTION FACTOR KUA1 16 250 - -
Vimu11g00185 312 MobiDBLite consensus disorder prediction 15 46 - -
Vimu11g00185 312 MobiDBLite consensus disorder prediction 1 80 - -
Vimu11g00185 312 MobiDBLite consensus disorder prediction 163 204 - -
Vimu11g00185 312 MobiDBLite consensus disorder prediction 291 312 - -
Vimu11g00185 312 ProSiteProfiles Myb-like domain profile. 71 123 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00185 Vimu-Chr11 1676870 1682319 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu11g00185 Myb_DNA-binding 1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00185 - - ccaj:109807943 562.762