Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00184 ATGACTATGGGGTGGACTTTGGGAAAGGAAGAAATTGAAAACCCTAGACAGCAGCAAAGAGAAGAAGTAAAACCACATGTGAGCCTTGTGGTGGTGGCAACAGCGGAGCACTTGCCATCGATGTTCGGGACGGGGACGGTCATGGTGAATTGCCCATTCTACTTCAAGAGAGGCACATGTAGGCACAGTGATTGGTGCTCTTTCCTCCATATGAAGCCGTGCATAAGTCCTACCATTCTGCTCTCCAACATGTATCAGCGCTCCGACATGATAACCCCCGGCGGCGATGCCCACGGCAACCCCCTCGACCAC 312 0.5256 MTMGWTLGKEEIENPRQQQREEVKPHVSLVVVATAEHLPSMFGTGTVMVNCPFYFKRGTCRHSDWCSFLHMKPCISPTILLSNMYQRSDMITPGGDAHGNPLDH 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00184 104 PRINTS U2 auxiliary factor small subunit signature 70 90 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vimu11g00184 104 PRINTS U2 auxiliary factor small subunit signature 51 70 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vimu11g00184 104 MobiDBLite consensus disorder prediction 1 23 - -
Vimu11g00184 104 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 71 IPR000571 GO:0046872
Vimu11g00184 104 ProSiteProfiles Zinc finger C3H1-type profile. 45 73 IPR000571 GO:0046872
Vimu11g00184 104 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 39 89 IPR009145 GO:0000398|GO:0003723|GO:0089701
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00184 Vimu-Chr11 1653602 1653922 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vimu11g00184 zf-CCCH 1e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00184 K12836 - gmx:100794975 111.694