Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00181 ATGGACATGGAAGAATCAAACCCTATGGAAACACAACTTCAACCAACCACTTCATCGTCCTCTTTCTCCATTACTACCTCCACCTCCACCTCCTCCTCCTCCTCTTCTTCCTCCGTAGACCAACGACAACAACCCACAAACACCAAGGACAAAAAAACCAAGAAAACCAACGTTAACACCAATCATGCCAACCACCCCACGTACAGAGGAGTTCGCATGCGCCAATGGGGCAAATGGGTGTCCGAAATCAGAGAGCCCAGAAAGAAGTCAAGAATTTGGCTCGGAACTTTTCCCACGCCGGATATGGCGGCGCGAGCACACGACGTGGCGGCTCTCACCATCAAAGGCAGCTCCGCCTTCCTCAATTTCCCCGAGTTAGCCGCCGAGCTGCCCCGCCCGACCACGAACTCCCCCAAGGATATCCAAGTGGCCGCCGCCAAAGCCGCAGCCTTGGATTTCCGCCCTCGAAGCCATGAAGCCGAGTCTGAGCTTAGCCGAGGCGGCTCCATTTCCAATTCTTCGTCGAATTCGTCGTTGAAGAGTGAGGATGACACATTCATGGACCTCCCCGATCTCTCTCTGGACTTGAGCCATGGAGTTGACGAGTTTCATTATTCCTCGGCTTGGCTTGTAGCCGGAAGCGAACTCGGGTTTCGGCTTGAAGAGCCTTTTCTTTGGGAATCATATTAA 690 0.5319 MDMEESNPMETQLQPTTSSSSFSITTSTSTSSSSSSSSVDQRQQPTNTKDKKTKKTNVNTNHANHPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFPTPDMAARAHDVAALTIKGSSAFLNFPELAAELPRPTTNSPKDIQVAAAKAAALDFRPRSHEAESELSRGGSISNSSSNSSLKSEDDTFMDLPDLSLDLSHGVDEFHYSSAWLVAGSELGFRLEEPFLWESY 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00181 229 MobiDBLite consensus disorder prediction 152 182 - -
Vimu11g00181 229 Gene3D AP2/ERF domain 67 125 IPR036955 GO:0003700|GO:0006355
Vimu11g00181 229 ProSiteProfiles AP2/ERF domain profile. 67 124 IPR001471 GO:0003700|GO:0006355
Vimu11g00181 229 MobiDBLite consensus disorder prediction 7 44 - -
Vimu11g00181 229 MobiDBLite consensus disorder prediction 164 182 - -
Vimu11g00181 229 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 42 195 - -
Vimu11g00181 229 SUPERFAMILY DNA-binding domain 67 125 IPR016177 GO:0003677
Vimu11g00181 229 MobiDBLite consensus disorder prediction 1 70 - -
Vimu11g00181 229 CDD AP2 68 126 IPR001471 GO:0003700|GO:0006355
Vimu11g00181 229 SMART rav1_2 67 130 IPR001471 GO:0003700|GO:0006355
Vimu11g00181 229 PRINTS Ethylene responsive element binding protein signature 68 79 IPR001471 GO:0003700|GO:0006355
Vimu11g00181 229 PRINTS Ethylene responsive element binding protein signature 90 106 IPR001471 GO:0003700|GO:0006355
Vimu11g00181 229 Pfam AP2 domain 66 116 IPR001471 GO:0003700|GO:0006355
Vimu11g00181 229 FunFam Ethylene-responsive transcription factor 2 66 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00181 Vimu-Chr11 1612161 1612850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00181 52 225 AP2-EREBP Transcription Factor Family AT2G44940 50.000 3.97e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vimu11g00181 AP2 8.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00181 - - vum:124847320 360.147