Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00179 ATGGCACCAAGGATCAACGATGCCACACCCAACAGATCAGCTATGAACAGAGGTTCATGGACCCCAGAGGAAGACAGAAAGCTTGCCCAATGCATCCAATTTCATGGTGCAAAGAGGTGGAAGACTATTGCAGTTAAATCAGGTTTGAATAGATGTGGGAAGAGTTGCAGACTGAGATGGTTAAACTATCTGAGACCTAATATCAAGAGGGGAAACATATCAGATGAAGAAGAAGATTTGATTCTTAGGCTTCACAGACTCTTGGGAAACAGGTGGTCTTTGATAGCTGGTAGGCTTCCAGGACGAACAGACAACGAAATTAAGAATTATTGGAATTCTCATTTGTGCAAAAAGGTGAATCAGAGAGAGGAGAAACCAGAATCTTCAACAACACATGAAATAGTTGGCCAGAATCAGAATCATGGGGACAACCTCGCACTGTCAGAGAACGAGGTTGCAACCAAGGATATTGCTAACTTAGATGTTACTTTCGACATTGATGAGTTTTTCAACTTCTCTGAGGAATCCTGTGGGCTAGATTGGCTGAACAAGTACTTGGAACTTGACCACATTCCTCAAACCACAGAAAACTCTTAA 597 0.4221 MAPRINDATPNRSAMNRGSWTPEEDRKLAQCIQFHGAKRWKTIAVKSGLNRCGKSCRLRWLNYLRPNIKRGNISDEEEDLILRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNSHLCKKVNQREEKPESSTTHEIVGQNQNHGDNLALSENEVATKDIANLDVTFDIDEFFNFSEESCGLDWLNKYLELDHIPQTTENS 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00179 198 CDD SANT 74 115 IPR001005 -
Vimu11g00179 198 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Vimu11g00179 198 FunFam MYB-related transcription factor 16 69 - -
Vimu11g00179 198 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Vimu11g00179 198 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 64 IPR017930 -
Vimu11g00179 198 CDD SANT 19 64 IPR001005 -
Vimu11g00179 198 Gene3D - 73 142 - -
Vimu11g00179 198 MobiDBLite consensus disorder prediction 1 21 - -
Vimu11g00179 198 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 12 138 - -
Vimu11g00179 198 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Vimu11g00179 198 Pfam Myb-like DNA-binding domain 70 115 IPR001005 -
Vimu11g00179 198 MobiDBLite consensus disorder prediction 122 142 - -
Vimu11g00179 198 Gene3D - 17 69 - -
Vimu11g00179 198 SMART sant 16 66 IPR001005 -
Vimu11g00179 198 SMART sant 69 117 IPR001005 -
Vimu11g00179 198 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Vimu11g00179 198 FunFam transcription repressor MYB5-like 74 141 - -
Vimu11g00179 198 SUPERFAMILY Homeodomain-like 15 111 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00179 Vimu-Chr11 1560259 1561078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00179 3 141 MYB Transcription Factor Family AT3G13540 57.447 1.56e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu11g00179 Myb_DNA-binding 2.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00179 K09422 - gmx:100799575 345.895