Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu11g00174 | TTGATTTATGTTGCAATAGGTGCCTACAAGTATGTCTCCGAGCTTTGGCGCAAGAAGCAGTCCGATGTTATGAGATTCTTGCAGCGGGTGAGGTGTTGGGAATACCGCCAACAACCATCAATTGTTCGTCTGACAAGGCCTACTCGCCCAGACAAGGCTCGCCGCTTGGGTTATAAGGCCAAGCAGGGTTACGTGGTTTACCGTGTGCGTGTTAGGAGGGGTGGCAGGAAGAGACCAGTTCCCAAAGGTATTGTTTACGGTAAGCCAACCAACCAAGGTGTTACTCAATTGAAGTTTCAACGCAGCAAGAGGTCCGTTGCTGAAGAGCGAGCTGGAAGGAAGTTGGGTGGCCTCAGGGTCCTCAATTCTTACTGGGTGAATGAGGATTCAACCTACAAATATTTTGAGATCATTCTGGTGGATGTTGCCCACAGTGCTGTAAGAAATGATCCAAGAATTAACTGGCTCTGCAATCCAGTCCATAAGCACAGGGAACTTCGTGGCCTCACCTCCGCTGGGAAAAGTAACAGGGGTTTACGTGGCAGAGGACACCTATACCACAAAAATCGTCCATCACGCAGGGCAACCTGGAAGCGAAACAACACTCTTTCTCTTCGTCGTTACCGCTGA | 630 | 0.4952 | MIYVAIGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEIILVDVAHSAVRNDPRINWLCNPVHKHRELRGLTSAGKSNRGLRGRGHLYHKNRPSRRATWKRNNTLSLRRYR | 209 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu11g00174 | 209 | PANTHER | RIBOSOMAL PROTEIN L15 | 7 | 209 | IPR000439 | GO:0003735|GO:0005840|GO:0006412 | |
| Vimu11g00174 | 209 | SUPERFAMILY | Ribosomal proteins S24e, L23 and L15e | 6 | 200 | IPR012678 | GO:0003735|GO:0005840|GO:0006412 | |
| Vimu11g00174 | 209 | MobiDBLite | consensus disorder prediction | 169 | 193 | - | - | |
| Vimu11g00174 | 209 | SMART | Ribosomal_L15e_2 | 7 | 198 | IPR000439 | GO:0003735|GO:0005840|GO:0006412 | |
| Vimu11g00174 | 209 | Pfam | Ribosomal L15 | 7 | 195 | IPR000439 | GO:0003735|GO:0005840|GO:0006412 | |
| Vimu11g00174 | 209 | Gene3D | Ribosomal protein l15e | 6 | 209 | IPR024794 | GO:0003735|GO:0005840 | |
| Vimu11g00174 | 209 | FunFam | Ribosomal protein L15 | 6 | 209 | - | - | |
| Vimu11g00174 | 209 | ProSitePatterns | Ribosomal protein L15e signature. | 51 | 74 | IPR020925 | GO:0003735|GO:0005840|GO:0006412 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vimu11g00174 | Vimu-Chr11 | 1507337 | 1508517 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vimu11g00174 | 6 | 209 | Cytoplasmic Ribosomal Protein Gene Family | AT4G16720 | 92.157 | 7.72e-128 | 357 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vimu11g00174 | K02877 | - | gmx:100306052 | 394.43 |