Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00165 ATGGACAATAGACACAAATGCAAGCTTTGTTCCAGGTCTTTCACCAATGGCAGAGCCCTTGGTGGTCACATGAAAGCTCATCTCGCTTCTCTCCCTCTTCCTCCAAAGCCTCAAACTTTAACTCACTCCTCCTCCTTCACTTATTCCTCTTCCTCAGACTCTCAACAACAACACCTCAAAGAACAAGATTCCCTTACTTACGCGCTCAGGGAGAATCCTAAGAAGACCTTCAGAGTAACGGATCCTGAAGACAGAGAGAGCGAGACCGAGTCAAAGAACCCAACTCGCCAACGATCCAAGAGGAATCGCAAATCCGCCATGCTCAAGCTCAGCTTCGTCGTCTCCACACCTCTCATCACCGAACCCGAACCTGTGAGTTCGGTCTCCGACACCTCCCCGGAGGAAGACGTGGCCATGAGCCTCATGATGCTCTCCCGCGACACCTGGAACGTAGTCACCAATGCAGGTCCACCGCAGAGATCAAAGAGGCGCTGCACGGGATCAGAAACCAAGCTCAAGAAACTCCGCGGCAAGTACCTCTGTCACACTTGCGGCAAAGCCTTTCGATCCTCTCGAGCTTTGGGGAGTCACAGAACCATTTGTTGTCGTCAAGAGGAAGCTCAGAATCAAAACAACGACAATAATAGTATTAAGGTTTTTGAATGTCCCTTTTGTTACAAGGTGTTCGGTTCTGGTCAGGCTCTGGGTGGACACAAGAGATCTCACCTAATCCCTTCATCGTCTTCAACAGTTAACGATTCCCTTAAATTCAAACAGACCTTCATAGATCTCAACATGCCGGCTCAGCCGGAAGAGGATGACCTTAGTGTTGTCTCTGATGCCTGA 846 0.4965 MDNRHKCKLCSRSFTNGRALGGHMKAHLASLPLPPKPQTLTHSSSFTYSSSSDSQQQHLKEQDSLTYALRENPKKTFRVTDPEDRESETESKNPTRQRSKRNRKSAMLKLSFVVSTPLITEPEPVSSVSDTSPEEDVAMSLMMLSRDTWNVVTNAGPPQRSKRRCTGSETKLKKLRGKYLCHTCGKAFRSSRALGSHRTICCRQEEAQNQNNDNNSIKVFECPFCYKVFGSGQALGGHKRSHLIPSSSSTVNDSLKFKQTFIDLNMPAQPEEDDLSVVSDA 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00165 281 SUPERFAMILY beta-beta-alpha zinc fingers 4 199 IPR036236 -
Vimu11g00165 281 ProSiteProfiles Zinc finger C2H2 type domain profile. 179 206 IPR013087 -
Vimu11g00165 281 ProSitePatterns Zinc finger C2H2 type domain signature. 222 242 IPR013087 -
Vimu11g00165 281 Pfam C2H2-type zinc finger 179 198 - -
Vimu11g00165 281 Pfam C2H2-type zinc finger 219 243 - -
Vimu11g00165 281 Pfam C2H2-type zinc finger 4 29 - -
Vimu11g00165 281 ProSiteProfiles Zinc finger C2H2 type domain profile. 220 242 IPR013087 -
Vimu11g00165 281 ProSitePatterns Zinc finger C2H2 type domain signature. 7 27 IPR013087 -
Vimu11g00165 281 MobiDBLite consensus disorder prediction 64 96 - -
Vimu11g00165 281 ProSiteProfiles Zinc finger C2H2 type domain profile. 5 32 IPR013087 -
Vimu11g00165 281 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 281 IPR044303 GO:0006355
Vimu11g00165 281 MobiDBLite consensus disorder prediction 30 105 - -
Vimu11g00165 281 MobiDBLite consensus disorder prediction 36 63 - -
Vimu11g00165 281 SUPERFAMILY beta-beta-alpha zinc fingers 218 243 IPR036236 -
Vimu11g00165 281 Gene3D Classic Zinc Finger 176 242 - -
Vimu11g00165 281 SMART c2h2final6 220 242 IPR013087 -
Vimu11g00165 281 SMART c2h2final6 5 27 IPR013087 -
Vimu11g00165 281 SMART c2h2final6 179 199 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00165 Vimu-Chr11 1442798 1443643 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00165 5 278 C2H2 Transcription Factor Family AT3G60580 37.294 1.82e-45 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu11g00165 zf-C2H2_6 3.3e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00165 - - gmx:100806512 377.481