Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00150 GTCATCTTCAAAATGTTTCTGCTTTTCAGTTCTTGCATGTTATTATTGCATGCAACAACTGTGACATGCACAACCTACCGCGACACCATTCCCAAAATGCTGTCTTCCACAAACTCATCCAGGTGGATCCGACCCACCGGACACCGAGTAATCACCGTCGACATTAACGGCGGAGGCCATTTCCGATCAGTCCAAGCCGCCGTCAATGCTGTCCCGGACAACAACACAATAAACGTTCATATTCAGATAAGCCCCGGATATTACATAGAGAAGGTGGTAGTGCCCGTGACGAAGCCGTACATTAGATTCGAAGGAGCGGGGAGAGATGTGACGGTGATAGAATGGCATGACAGGGCGAGTGACCCAGGTCCCAACGGCCAACAATTGCGTACTTACAGAACAGCTTCTGTTACTGTTTTTGCCAACTATTTCTCTGCTAGGAATATCAGCTTCAAGAACACTTCTCCGGCGCCGATGCCGGGAATGGAGGGGTGGCAAGCGGCGGCGTTTCGCATTTCCGGGGACAAAGCCTATTTCTCCGGCTGCGGTTTCTACGGTGCACAAGACACTCTCTGCGACGATGCTGGCCGTCATTACTTCAAAGAATGTTACATTGAGGGTTCCATCGATTTCATTTTTGGGAATGGCAGGTCCATGTACAAGGATTGCAGGCTACACTCAATTGCCACGAGGTTTGGGTCGATAGCAGCCCAAGATAGGAAATCCCCATACGAGAAAACAGGCTTCGCATTCGTACGGTGCAAAGTGACAGGAACAGGCCCAATTTATGTGGGCCGTGCAATGGGCCAGTACTCTAGGATTGTGTATGCCTACACCTACTTCGACAACATAGTTGCACATGGTGGTTGGGATGATTGGAACACTTCCTACAATAACAAGACTGTGTTCTTTGGAGTGTACAAATGCTGGGGACCAGGTGCTGCGGCTATACGTGGAGTCCCATTAGCCAAAGAGCTAGATTTTGAATCTGCCCACCCATTCCTGGTCAAGAGTTTTGTTAATGGGAAACACTGGATGACACCCTCTGATGCTTAG 1056 0.4934 VIFKMFLLFSSCMLLLHATTVTCTTYRDTIPKMLSSTNSSRWIRPTGHRVITVDINGGGHFRSVQAAVNAVPDNNTINVHIQISPGYYIEKVVVPVTKPYIRFEGAGRDVTVIEWHDRASDPGPNGQQLRTYRTASVTVFANYFSARNISFKNTSPAPMPGMEGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCRLHSIATRFGSIAAQDRKSPYEKTGFAFVRCKVTGTGPIYVGRAMGQYSRIVYAYTYFDNIVAHGGWDDWNTSYNNKTVFFGVYKCWGPGAAAIRGVPLAKELDFESAHPFLVKSFVNGKHWMTPSDA 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00150 351 FunFam Pectinesterase 46 348 - -
Vimu11g00150 351 Pfam Pectinesterase 51 342 IPR000070 GO:0030599|GO:0042545
Vimu11g00150 351 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 46 347 - -
Vimu11g00150 351 Gene3D - 46 350 IPR012334 -
Vimu11g00150 351 SUPERFAMILY Pectin lyase-like 48 348 IPR011050 -
Vimu11g00150 351 ProSitePatterns Pectinesterase signature 2. 205 214 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00150 Vimu-Chr11 1350280 1354016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00150 6 351 Carbohydrate Esterase AT5G47500 70.774 0.0 524
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00150 - - gmx:100796327 642.499