Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00116 ATGGATTTGAAGTCCTCTCATGTTTCTCCTGTTCTCACTGACCCTGTTCCCGTCAATAAGTCAAGGCTTGGAATGCATTCTAGTCTGCTGGCTTATTCCCAGCAAGATTCACCAGTCTCTCCGGGGAAGTACTCAAGAAGCAATTCAAGGAAAAGTACAGGGAGTGTCGATGATGTGAGGTCCAATGGTTGGTTGGATGCCATGAAGGCTTCTTCCCCTCCAAGGAAGAAGCTACTTAAAGGATCCAGTTTTCAGATTGCTTCAATTGACTTTGAGATTGAAGATTATTGTACATGGATGCTTGAATATCCTTCAGCACTAGACTCTTTTGAGAAAATCGTTGACCTTGCTCAGAATAAGAAGATTGCTATGTTTCTAGACTATGACGGCACACTTTCACCGATTGTAGATGATCCGGATTGTGCCTTTATGTCCGAATCTATGAGAACAACTGTGAGAAGTGTGGCAACATATTTCCCCACAGCAATCATCAGTGGAAGAAGCCGTGACAAGGTTTTTGATCTTGTTAAACTAACAGAACTGTACTACGCTGGTAGTCATGGGATGGACATTATTGGCCCTGTCAGTGAGACTTTGTCCAAAAACCACCCTAATTGTGTAAAGTCTAAAGACCATGAGGGAAAGGAAATAACTCTCTTTCAACCTGCGAGAGAATTCCTGCCTATGGTTGATGAGGTTTTTAGAACCCTCGTCGAGATTACTAAAGATATAGAAGGCGTAAAAGTTGAAAATCACAAATTTTGCGTTTCTGTACATTACCGTAATGTAGAGGAGAATAATTGGACAATAGTTGGACAACGTGTCCATGATGTCTTGCAAAATTACCCTCGTTTATGTTCAACTCATGGACGGAAGGTTTTAGAAGTTCGTCCTGTGATTGACTGGAATAAAGGAAAAGCTGTTGAATTTTTACTTGAATCTCTAGGATTTAATGATAGTGATGGTGTGCTTCCCATCTACATTGGAGATGATAAAACTGATGAAGATGCATTCAAGGTGCTGCGAGAGAGCAATAGAGGCTATGGGATTTTGGTTTCGTCGGTGAGGAAAGAAAGCAATGCCTTCTACTCTCTCCGAGACCCCAATGAGGTCATGAAATTTCTCCAACTCTTGGTGAACTGGAAAAGACAAGAAAGAAAGCATGGGAAGATGTAA 1176 0.415 MDLKSSHVSPVLTDPVPVNKSRLGMHSSLLAYSQQDSPVSPGKYSRSNSRKSTGSVDDVRSNGWLDAMKASSPPRKKLLKGSSFQIASIDFEIEDYCTWMLEYPSALDSFEKIVDLAQNKKIAMFLDYDGTLSPIVDDPDCAFMSESMRTTVRSVATYFPTAIISGRSRDKVFDLVKLTELYYAGSHGMDIIGPVSETLSKNHPNCVKSKDHEGKEITLFQPAREFLPMVDEVFRTLVEITKDIEGVKVENHKFCVSVHYRNVEENNWTIVGQRVHDVLQNYPRLCSTHGRKVLEVRPVIDWNKGKAVEFLLESLGFNDSDGVLPIYIGDDKTDEDAFKVLRESNRGYGILVSSVRKESNAFYSLRDPNEVMKFLQLLVNWKRQERKHGKM 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00116 391 MobiDBLite consensus disorder prediction 34 58 - -
Vimu11g00116 391 Pfam Trehalose-phosphatase 125 368 IPR003337 GO:0003824|GO:0005992
Vimu11g00116 391 FunFam Trehalose 6-phosphate phosphatase 229 388 - -
Vimu11g00116 391 NCBIfam trehalose-phosphatase 120 379 IPR003337 GO:0003824|GO:0005992
Vimu11g00116 391 Gene3D - 218 391 IPR023214 -
Vimu11g00116 391 Gene3D - 122 210 IPR023214 -
Vimu11g00116 391 SUPERFAMILY HAD-like 123 383 IPR036412 -
Vimu11g00116 391 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 32 387 IPR044651 GO:0004805|GO:0005992
Vimu11g00116 391 FunFam Trehalose 6-phosphate phosphatase 223 299 - -
Vimu11g00116 391 NCBIfam HAD-IIB family hydrolase 124 342 IPR006379 -
Vimu11g00116 391 FunFam Trehalose 6-phosphate phosphatase 122 211 - -
Vimu11g00116 391 CDD HAD_TPP 123 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00116 Vimu-Chr11 1077037 1079957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00116 109 375 Trehalose Biosynthesis Gene Families AT1G23870 26.855 4.00e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00116 K01087 - qsa:O6P43_024315 591.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g00116 11 1077037 1079957 Vimu11g00116 11 1077037 1079957 ECH