Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00110 ATGTCATCCTCTTCCACCACAATATCACTGGACCACCTCCCTCCTTCCGAACAGCTTTGTTATGTTCACTGCAATATTTGTGACACCGTCCTTGCTGTAAGTGTTCCCTGCACAAGCTTGTTCAAGACAGTTACTGTCCGATGCGGCCATTGCACTAACCTTCTGCCAGTGAACATGCGCGGCCTGCTTGTGCCATCTCCTACTCAATTTCATTTGGGTCACTCTTTCTTCTCCCCATCCCATAACCTTCTGGAGGAGATACCAAACCCATCTCCAAATTTTCTTATGAACCAAGCAAATTTAAGTGCTTCAAATGAGTTTTCTATGCCTGCCAGGACTGCAGCTGATGAGCTTCCACGGCCACCGATCATAAACAGACCTCCTGAGAAGAGACAGAGAGTCCCCTCCGCGTACAACCGCTTTATCAAGGACGAGATCCAACGCATCAAGTCTGTCAATCCCGATATAACTCACAGGGAAGCCTTCAGTGCAGCTGCCAAGAATTGGGCCCACTTCCCACACATCCACTTTGGTCTCATGCCTGATCAGACTGTGAAGAAGACAAATGTGTGCCAGCAGGAAGGAGAAGAGGTTCTCATGAAAGATGGGTTTTATGCTTCAGCTAATGTTGGTGTCTCACCCTACTAA 648 0.4799 MSSSSTTISLDHLPPSEQLCYVHCNICDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRGLLVPSPTQFHLGHSFFSPSHNLLEEIPNPSPNFLMNQANLSASNEFSMPARTAADELPRPPIINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNVCQQEGEEVLMKDGFYASANVGVSPY 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00110 215 Gene3D High mobility group box domain 124 187 IPR036910 -
Vimu11g00110 215 SUPERFAMILY HMG-box 123 172 IPR036910 -
Vimu11g00110 215 CDD HMG-box_SF 133 169 - -
Vimu11g00110 215 FunFam Axial regulator YABBY 124 195 - -
Vimu11g00110 215 PANTHER PROTEIN YABBY 6-RELATED 1 189 IPR006780 GO:0007275
Vimu11g00110 215 Pfam YABBY protein 15 179 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00110 Vimu-Chr11 996866 999720 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00110 26 213 C2C2-YABBY Transcription Factor Family AT4G00180 59.809 2.95e-63 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Vimu11g00110 YABBY 1.3e-70 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00110 K25796 - gmx:100798441 435.647