Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00108 ATGAACACATTTTCGCATGTACCTCCAGGCTTTCGGTTTCATCCGACCGATGAAGAACTGGTAGGTTACTACCTTAGGAAGAAGGTAGCATCTAAAAGGATTGATCTAGATGTGATCAAAGATGTAGATCTCTATAAGATTGAACCATGGGAGTTATGCAAAATAGGAACAGATGAACAAAGTGACTGGTATTTCTTCAGTCATAAAGATAAGAAATACCCAACTGGAACTCGCACGAATAGAGCTACAAAAGCAGGATTTTGGAAAGCGACGGGAAGAGACAAGGCAATATACTCTAAGCATTGCCTGATTGGCATGAGAAAGACTCTTGTGTTTTACAAAGGAAGAGCCCCAAATGGACAGAAGTCTGATTGGATCATGCATGAGTACAGGCTAGAAACTAATGAAAATGGAACTCCTCCGGTAATTTCCATTCAAATTCAAACACACATTTTTTTGTTTACATTTTTCAGGTTTGCTTTCTGTTTATTGGTTACTGATTTATAA 507 0.3826 MNTFSHVPPGFRFHPTDEELVGYYLRKKVASKRIDLDVIKDVDLYKIEPWELCKIGTDEQSDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYSKHCLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNENGTPPVISIQIQTHIFLFTFFRFAFCLLVTDL 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00108 168 ProSiteProfiles NAC domain profile. 7 158 IPR003441 GO:0003677|GO:0006355
Vimu11g00108 168 SUPERFAMILY NAC domain 5 138 IPR036093 GO:0003677|GO:0006355
Vimu11g00108 168 Gene3D NAC domain 16 149 IPR036093 GO:0003677|GO:0006355
Vimu11g00108 168 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 135 - -
Vimu11g00108 168 Pfam No apical meristem (NAM) protein 8 132 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00108 Vimu-Chr11 974393 975035 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00108 1 140 NAC Transcription Factor Family AT1G12260 89.510 1.40e-94 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu11g00108 NAM 2.2e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00108 - - gmx:100797916 295.434