Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00100 ATGGCAACAAAGCTACTATGCCTTTCTCTGCTCATTCTAAATCTGCTCCTTCACATGTCTACCACTGCCGAATCCGCAACTTCGACAACAGACTTCATCAAGTCCTCATGCATGGCGACAAGGTACCCCGTGGCGTGCGTTGAAAGCCTCTCAGGCTACGCCAGCAAGATTAGGCCGAGCGAGGAAGAACTAGCCAGCACTGCCATGAGCGTGAGCGTATCCAAGACTCGATCATGCGTATCGTCTCTTGAGAAGATGGAGAAGACGAAGGGACTGCAAGCAAGAGAGTACAATGCGGTGCAAGATTGCATAGAGAACATGAATGATAGTGTGGACAATCTTAACCGATCGATGAAGGAGCTGGGCCTCCTGGGTAAGGGGAAGGATTCCCGGTTGCACATCAGCAATATTCAGACTTGGGTTAGTGCTGCTATGACTTATCAGGACACGTGTCTTGACAGCATTAATGATGCTAATTTCAAGCCTTCCATTAAACCTGAGGTTGTCGATGCTTCTCAAGTCACCAGTAATGCTCTTGCATTGGTTAATCGCTTTGCCTCCAAGTACCGCACTTAG 576 0.4861 MATKLLCLSLLILNLLLHMSTTAESATSTTDFIKSSCMATRYPVACVESLSGYASKIRPSEEELASTAMSVSVSKTRSCVSSLEKMEKTKGLQAREYNAVQDCIENMNDSVDNLNRSMKELGLLGKGKDSRLHISNIQTWVSAAMTYQDTCLDSINDANFKPSIKPEVVDASQVTSNALALVNRFASKYRT 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00100 191 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 185 IPR035513 -
Vimu11g00100 191 Pfam Plant invertase/pectin methylesterase inhibitor 31 181 IPR006501 GO:0004857
Vimu11g00100 191 CDD PMEI-like_3 35 187 - -
Vimu11g00100 191 PANTHER PECTINESTERASE INHIBITOR-LIKE 10 181 - -
Vimu11g00100 191 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 31 186 IPR035513 -
Vimu11g00100 191 Coils Coil 104 124 - -
Vimu11g00100 191 SMART PMEI_2 28 181 IPR006501 GO:0004857
Vimu11g00100 191 FunFam Pectinesterase inhibitor 3 28 186 - -
Vimu11g00100 191 NCBIfam pectinesterase inhibitor domain 8 183 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00100 Vimu-Chr11 911978 912553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00100 26 182 Carbohydrate Esterase AT1G53830 29.012 6.63e-18 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00100 - - var:108341180 298.516