Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00087 ATGGGTTCTCAATCTAACAACGGCATCAGCTATTCCACTTCGGAGCCCAATCTCTGCGCCAACAACTGCGGTTTCTACGGCACTCCTGATAAAGGAAACTTCTGTTCCAAATGCTACAAGCAACTTTGTCTCCAGGTGCAGCCTTCTGCGATAGACTCTCTCTTATGTCCCTCCGCGCCGCCGGCGCTTCTTGACGAGGTAAAGCCATCCTCTTCGGTCGAGCAGTCGCCGCCGTGCGCGGCTGGGCCTTCCAAACCCAAGAATCGGTGCGGGCATTGTAACAGAAAAGTGGGTTTAACCGGGTTCCTGTGCAAGTGTGGGACCCTCTTCTGCGGGGTGCACCGTTACCCGGAGAAGCACGAGTGTACCTATGACTTCAGGGCTGCAGGGCGTGAAGCGATTTCTAAGGAAAATCCTACTGTAAAGGGTGAGAAGCTGCAAAGGTTTTAG 450 0.5378 MGSQSNNGISYSTSEPNLCANNCGFYGTPDKGNFCSKCYKQLCLQVQPSAIDSLLCPSAPPALLDEVKPSSSVEQSPPCAAGPSKPKNRCGHCNRKVGLTGFLCKCGTLFCGVHRYPEKHECTYDFRAAGREAISKENPTVKGEKLQRF 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00087 149 ProSiteProfiles Zinc finger AN1-type profile. 84 130 IPR000058 GO:0008270
Vimu11g00087 149 PANTHER AN1-TYPE ZINC FINGER PROTEIN 16 148 - -
Vimu11g00087 149 SMART AN1_Zf_4 90 127 IPR000058 GO:0008270
Vimu11g00087 149 Pfam AN1-like Zinc finger 90 125 IPR000058 GO:0008270
Vimu11g00087 149 SMART A20_3 16 40 IPR002653 GO:0003677|GO:0008270
Vimu11g00087 149 Gene3D - 2 61 - -
Vimu11g00087 149 SUPERFAMILY AN1-like Zinc finger 81 144 IPR035896 -
Vimu11g00087 149 Gene3D - 65 145 IPR035896 -
Vimu11g00087 149 FunFam Zinc finger AN1-type containing 6 65 145 - -
Vimu11g00087 149 ProSiteProfiles Zinc finger A20-type profile. 13 47 IPR002653 GO:0003677|GO:0008270
Vimu11g00087 149 Pfam A20-like zinc finger 18 40 IPR002653 GO:0003677|GO:0008270
Vimu11g00087 149 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 18 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00087 Vimu-Chr11 802267 802716 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00087 18 149 C2H2 Transcription Factor Family AT3G52800 40.385 1.29e-33 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00087 - - vun:114175511 258.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g00087 11 802267 802716 Vimu11g00087 11 802267 802716 ECH