Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00086 ATGAATGGTTTGATTTCAGGATTTCTTGGTAAGTATGTACTGATAAGCGTTTCCTTTTCTCAGAAGGAAAGAATGAAATATCAGAAAGACTATAATAAGGAATCAATTAAGAAGCTAGAAGAGAAGGTGATGGAGAATAAGAAAAAGTACGAGGAATTTTGTATGACATCTACTGCAGAGATGGCCATTGTGCCTGTTGAGGAAGTAGTCATTTTGAAAAATTTACTTCAGAAAGAGACTCTTATCAGAAATGCTACAGAAGGGGAGCTAAATCGTCTGAAAAGTCAAATGAAAGAACTGAAAGATCTGGAGGCATCAAGAGAGTCACATATCTTAAAACTTCGTAAGATGTTGGAAGATGAAGCACGCCAGAAGGAGAATCTCAAAAGAGAAATAGCCAGATTGCAAAGTCAACTGCTGCAATTAGGTTTTAATGTTGGAAAAAAAACACAAAAAATTCGTCGAGTTGGATCTGAGAAAGTTGCTGGTGGTTTAGATTATACTCCCTCTTTCCTAGTTAAACATCAACAGCAAGCTTCAGGAAATGGAGAGGAGGCCTCAGCTGCCAAGCTCTTTGAACAAGGCAGTGGGTTGCAGAAGATTCTGTCATTGCTTGGAGCAGAAGATGATGATGTACAAATCCATGCCGTGAAAATAATAGCTAATTTAGCTTGTGAAGAAAGAAACCAGAAGAAGATTGTAGAAGCAGGTGTACTTACACCCTTGCTTTCACTCCTTAAGAACTCAAAAGATGAAAACACACATAGAGTTGCAGTAAGCGCCATTGCCAATTTGGCAATGAATGAAACCAATCAAAATCTCATTGCGGCTCAAGGAGGCATTAATTTACTGTCAATGGTAGCAGCCAATGCCGAAGATCCTCAGACCCTTCGAATGGTTGCTGGAGCATTTGCTAATCTTTTTGGAAATGATAAACTACAAATAAAGATAAGGGATGAAGGTGGTCTCAAGGCACTATTGGGAATGGTCAGATGCAGACATCCTGATGTACACACCCAGGTTGCCCGTGCAATAGCCAACTTTGCAAAATGTGAATCTAAAGCATCTACTCAAGGAACAAAGGTCGAAAGGTCTTTACTTATAGTGGACGATTTGCTTCCGTGGATTGTGCAAAACGCAAACAATGAAGTCTCGTTAGTTAGGCGTCATATTGAGATTGCTCTCTGCCACTTAGCAAAATTTGAAGCAAATGCAATAGATATGATCAGTGGAGGTGCAATGGGAGAGTTGGTTCGAGTCTCAAGAGATTCTTCAAGAGAAGATATAAGGATTCTTGCACGTGAAACACTAATCTCCAACCCTGCTTTCCATGCTCAAATCAGGCATTCGGGATTGAATATGGTTGAATAA 1371 0.3968 MNGLISGFLGKYVLISVSFSQKERMKYQKDYNKESIKKLEEKVMENKKKYEEFCMTSTAEMAIVPVEEVVILKNLLQKETLIRNATEGELNRLKSQMKELKDLEASRESHILKLRKMLEDEARQKENLKREIARLQSQLLQLGFNVGKKTQKIRRVGSEKVAGGLDYTPSFLVKHQQQASGNGEEASAAKLFEQGSGLQKILSLLGAEDDDVQIHAVKIIANLACEERNQKKIVEAGVLTPLLSLLKNSKDENTHRVAVSAIANLAMNETNQNLIAAQGGINLLSMVAANAEDPQTLRMVAGAFANLFGNDKLQIKIRDEGGLKALLGMVRCRHPDVHTQVARAIANFAKCESKASTQGTKVERSLLIVDDLLPWIVQNANNEVSLVRRHIEIALCHLAKFEANAIDMISGGAMGELVRVSRDSSREDIRILARETLISNPAFHAQIRHSGLNMVE 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00086 456 SMART arm_5 226 267 IPR000225 GO:0005515
Vimu11g00086 456 SMART arm_5 183 225 IPR000225 GO:0005515
Vimu11g00086 456 SMART arm_5 268 309 IPR000225 GO:0005515
Vimu11g00086 456 SMART arm_5 310 350 IPR000225 GO:0005515
Vimu11g00086 456 Pfam Armadillo/beta-catenin-like repeat 228 266 IPR000225 GO:0005515
Vimu11g00086 456 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 237 280 IPR000225 GO:0005515
Vimu11g00086 456 PANTHER VACUOLAR PROTEIN 8 179 440 IPR045156 GO:0043495|GO:0071562
Vimu11g00086 456 Gene3D - 177 451 IPR011989 -
Vimu11g00086 456 SUPERFAMILY ARM repeat 190 437 IPR016024 -
Vimu11g00086 456 Coils Coil 83 145 - -
Vimu11g00086 456 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 196 238 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00086 Vimu-Chr11 790424 797661 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00086 198 351 U-box Gene Family AT5G62560 27.273 3.47e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00086 - - vra:106766300 785.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g00086 11 790424 797661 Vimu11g00086 11 790424 797661 ECH