Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00084 ATGGATCCAATCACAGCACATGGTCAGTCCCTTCCCCCTCCTTTCCATCCAAGAGATCTCCATCTGCACCACCAGCCGCAGCAGCACCAATTCCAAACCTTAAGCCAAGCCACCGACGACGAGAACAGCGGAAGCAGCAGCGCGCAGAAAAGGGACCGCGAAGAGAACAACGGCAACAACAACGATGAAGGTGCTGGTGAGGCTGAGATAACAAGGAGACCTCGCGGGAGACCAGCCGGTTCCAAAAACAAACCCAAGCCACCCATTATCATCACTCGCGACAGCGCCAACGCCATGAGAACCCACATGATGGAGGTGGCAGACGGCTGCGACATCGTTGACAGCGTGTCTGAGTTCGCCAGGAAACGCCAGAGAGGGGTTTGCATCTTGAGTGGGACTGGCACAGTCACCAACGTCACTCTCAGGCAACCGGCTTCTTCCGGTGCGGTTGTCACGCTCCATGGAAGGTTCGAGATTTTGTCCCTCAGTGGATCTTTCCTTCCGCCGCCTGCGCCACCGGCTGCTTCCGGTTTGACCATTTACTTGGCCGGTGGGCAGGGACAGGTGGTGGGAGGGAGTGTGGTTGGGACGCTGGTTGCTTCGGGGCCTGTGGTGATCATGGCTGCTTCGTTCAGCAACGCTGCTTACGAGAGGCTTCCTTTGGAGGATGAAGACCCTTCGCTGCAAATGCAAGGAGGCTCAATTGGGTCACCCGGTGCAAGTGGTGTTGGTCAGTCACAGCTTCTAGGAGGAGGAGATGCGACCGCTCCACTTTTCCATGGTTTGCCTAACCTTCTCAATTCTGTTCAAATGCCATCTGAGCCATTCTGGGCATCCAATCGCCCACCCTTCTAG 855 0.5649 MDPITAHGQSLPPPFHPRDLHLHHQPQQHQFQTLSQATDDENSGSSSAQKRDREENNGNNNDEGAGEAEITRRPRGRPAGSKNKPKPPIIITRDSANAMRTHMMEVADGCDIVDSVSEFARKRQRGVCILSGTGTVTNVTLRQPASSGAVVTLHGRFEILSLSGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGTLVASGPVVIMAASFSNAAYERLPLEDEDPSLQMQGGSIGSPGASGVGQSQLLGGGDATAPLFHGLPNLLNSVQMPSEPFWASNRPPF 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00084 284 Pfam Plants and Prokaryotes Conserved (PCC) domain 100 213 IPR005175 -
Vimu11g00084 284 MobiDBLite consensus disorder prediction 45 76 - -
Vimu11g00084 284 MobiDBLite consensus disorder prediction 26 44 - -
Vimu11g00084 284 CDD DUF296 100 211 IPR005175 -
Vimu11g00084 284 Gene3D - 99 231 - -
Vimu11g00084 284 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 40 248 IPR014476 GO:0003680
Vimu11g00084 284 MobiDBLite consensus disorder prediction 1 91 - -
Vimu11g00084 284 PIRSF ESCAROLA 16 284 IPR014476 GO:0003680
Vimu11g00084 284 SUPERFAMILY AF0104/ALDC/Ptd012-like 96 228 - -
Vimu11g00084 284 FunFam AT-hook motif nuclear-localized protein 99 226 - -
Vimu11g00084 284 ProSiteProfiles PPC domain profile profile. 96 232 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00084 Vimu-Chr11 785337 786191 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00084 1 284 AT-hook Motif Nuclear Localized (AHL) Family AT2G45430 54.908 2.20e-82 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00084 - - gmx:100807581 454.907