Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00072 ATGGAGTCAAGTGGCGGTGTCAGCGGCGGCGTTACGGTGGTGGGATCGGATGCTCCGTCGGATTACCATGTAGCTCCGAGGACGGACAACCCAACTCCCGCAAGCGGATCCACGACGCAAATTCCGGCGACGGCGGGGAGTGCTCCTCCGGTACAACCACCGCACACGGCAGCGACGGAAGCGTCGCCGGCGTCGATGCCGGCTAAAAAGAAGAGAGGGCGCCCGAGAAAGTACGCACCGGACGGCTCCGTCACCATGGCGCTGTCTCCGAAGCCGATATCTTCGTCCGCTCCGTTGCCGCCGGTGATCGATTTCTCGTCGGAGAAGCGCGGAAAAATAAAACCAACGAGTTCCGTGAGCAAAGCGAAATTTGAGTTGGAGAATTTAGGTGAATGGGTTGCATGCTCAGTTGGTGCTAATTTCACTCCCCATATCATCACTGTTAATTCTGGGGAGGATGTGACTATGAAGGTAATATCATTTTCTCAGCAAGGGCCTCGAGCTATATGCATTCTTTCAGCTAATGGTGTCATATCAAGTGTCACACTTCGTCAGCCCGATTCTTCTGGAGGCACATTGACATATGAGGGACGGTTTGAAATTCTGTCTTTATCTGGCTCATTCATGCCCAATGAAAGTGGAGGAACACGAAGCAGATCCGGTGGCATGAGTGTATCTTTGGCAAGCCCTGATGGACGTGTTGTAGGTGGAGGAGTAGCTGGTTTATTGGTGGCTGCAAGTCCTGTGCAGGTAGTGGTAGGAAGTTTTCTGGCAGGAAACCAACATGAGCAGAAGCCAAGAAAACAGAAACATGAAGTTATATCAAGCGTGACAGCAGCAGCAGTTGTTCCCATCTCCACCCTTGATCCAATACCAATTCTATCATCAGCAACTTCCATCCGCGGAGAAAGTTGGTCTGCTATGCCAGCAGAAGCCAAGAATAAGCCAGCTGACATTAACGTGTCGCTTCCAGCAGGGTAA 981 0.5199 MESSGGVSGGVTVVGSDAPSDYHVAPRTDNPTPASGSTTQIPATAGSAPPVQPPHTAATEASPASMPAKKKRGRPRKYAPDGSVTMALSPKPISSSAPLPPVIDFSSEKRGKIKPTSSVSKAKFELENLGEWVACSVGANFTPHIITVNSGEDVTMKVISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPNESGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLAGNQHEQKPRKQKHEVISSVTAAAVVPISTLDPIPILSSATSIRGESWSAMPAEAKNKPADINVSLPAG 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00072 326 CDD DUF296 142 233 IPR005175 -
Vimu11g00072 326 MobiDBLite consensus disorder prediction 1 117 - -
Vimu11g00072 326 SUPERFAMILY AF0104/ALDC/Ptd012-like 140 259 - -
Vimu11g00072 326 Pfam Plants and Prokaryotes Conserved (PCC) domain 143 256 IPR005175 -
Vimu11g00072 326 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 40 276 IPR039605 GO:0003680
Vimu11g00072 326 FunFam AT-hook motif nuclear-localized protein 1-like 143 273 - -
Vimu11g00072 326 Gene3D - 143 275 - -
Vimu11g00072 326 MobiDBLite consensus disorder prediction 30 46 - -
Vimu11g00072 326 MobiDBLite consensus disorder prediction 306 326 - -
Vimu11g00072 326 ProSiteProfiles PPC domain profile profile. 138 277 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00072 Vimu-Chr11 672813 676689 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00072 1 323 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 62.254 3.49e-129 371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00072 - - gmx:100794202 572.778