Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00062 ATGAGTTCACGATCTTTGAGGGTAAGTCGTCAGAGGAAGATGTTGCAGCTGGACCTGAACATCGTGCCACCATTAGAGGACAACAGTGTCCGAATTGATGTTGATCCAAATCAGGATGATACAGATGATGATGATGTGGTTGAACTGTCACCAACTACATTTGCTCAGACTCGGAGCAATCAGAAGAGGAAGATTAACAGGAGGAGCATTTATGATATAGATGATGAGACTGGAGAATTGCCAAAAGAGATAGTAATTGACGGAAAGGTCTATAGAACTGTGGAAACTGGTAGCAGTTCTACGCCGCCTGCACTTGACTGTCCAATATGCATGGCTGCTTTTGAAGAACCAATGTCTACGAGGTGTGGTCATATATTTTGTAGGGGTTGCATTAACACTGCAATAGCTGCACAGGGTAAATGCCCTACCTGCAGAAAGAAGGTTACGAAGAACCAACTCATAAGGGTGTTTCTTCCATCTCTTAGTTAA 489 0.4335 MSSRSLRVSRQRKMLQLDLNIVPPLEDNSVRIDVDPNQDDTDDDDVVELSPTTFAQTRSNQKRKINRRSIYDIDDETGELPKEIVIDGKVYRTVETGSSSTPPALDCPICMAAFEEPMSTRCGHIFCRGCINTAIAAQGKCPTCRKKVTKNQLIRVFLPSLS 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00062 162 Pfam Zinc finger, C3HC4 type (RING finger) 107 144 - -
Vimu11g00062 162 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 52 161 IPR013083 -
Vimu11g00062 162 SUPERFAMILY RING/U-box 100 157 - -
Vimu11g00062 162 ProSitePatterns Zinc finger RING-type signature. 122 131 IPR017907 -
Vimu11g00062 162 PANTHER ELFLESS, ISOFORM B 100 160 - -
Vimu11g00062 162 ProSiteProfiles Zinc finger RING-type profile. 107 145 IPR001841 -
Vimu11g00062 162 SMART ring_2 107 144 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00062 Vimu-Chr11 550694 552866 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00062 1 160 C3H Transcription Factor Family AT5G48655 36.318 3.89e-32 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00062 K22651 - gmx:100778432 139.428